The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology

(2013) Martin von Bergen et al.   ISME Journal

Different Selective Effects on Rhizosphere Bacteria Exerted by Genetically Modified versus Conventional Potato Lines

(2013) Armando Cavalcante Franco Dias et al.   PLoS One

Stable isotope probing of bacterial community structure and gene expression in the rhizosphere of Arabidopsis thaliana

(2012) Feth el Zahar Haichar et al.   FEMS MICROBIOLOGY ECOLOGY

Soil organic matter turnover is governed by accessibility not recalcitrance

(2012) Jennifer A. J. Dungait et al.   GLOBAL CHANGE BIOLOGY

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

(2012) M. Francesca Cotrufo et al.   GLOBAL CHANGE BIOLOGY

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

(2012) Jana Seifert et al.   MASS SPECTROMETRY REVIEWS

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline

(2012) S. E. Hannula et al.   NEW PHYTOLOGIST

Breeding crop plants with deep roots: their role in sustainable carbon, nutrient and water sequestration

(2011) D. B. Kell   ANNALS OF BOTANY

Multiple DNA Extractions Coupled with Stable-Isotope Probing of Anthracene-Degrading Bacteria in Contaminated Soil

(2011) Maiysha D. Jones et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil carbon sequestration to mitigate climate change: a critical re-examination to identify the true and the false

(2011) D. S. Powlson et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

High diversity and abundance of putative polyphosphate-accumulating Tetrasphaera-related bacteria in activated sludge systems

(2011) Hien Thi Thu Nguyen et al.   FEMS MICROBIOLOGY ECOLOGY

Increased nitrate availability in the soil of a mixed mature temperate forest subjected to elevated CO2 concentration (canopy FACE)

(2011) Patrick Schleppi et al.   GLOBAL CHANGE BIOLOGY

Persistence of soil organic matter as an ecosystem property

(2011) Michael W. I. Schmidt et al.   NATURE

Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity-function relationships

(2010) U. N. Nielsen et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Rhizosphere priming effect increases the temperature sensitivity of soil organic matter decomposition

(2010) BIAO ZHU et al.   GLOBAL CHANGE BIOLOGY

Synergies between the mitigation of, and adaptation to, climate change in agriculture

(2010) P. SMITH et al.   JOURNAL OF AGRICULTURAL SCIENCE

A warm response by soils

(2010) Pete Smith et al.   NATURE

Ecosystem response to elevated CO2 levels limited by nitrogen-induced plant species shift

(2010) J. Adam Langley et al.   NATURE

Temperature-associated increases in the global soil respiration record

(2010) Ben Bond-Lamberty et al.   NATURE

Microbial production of recalcitrant organic matter in global soils: implications for productivity and climate policy

(2010) Chao Liang et al.   NATURE REVIEWS MICROBIOLOGY

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

(2010) B. Drigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An appraisal of methods for linking environmental processes to specific microbial taxa

(2010) Maria-Luisa Gutierrez-Zamora et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Enhancing soil carbon storage for carbon remediation: potential contributions and constraints by microbes

(2010) Gary M. King   TRENDS IN MICROBIOLOGY

Identification of a Novel Toluene-Degrading Bacterium from the Candidate Phylum TM7, as Determined by DNA Stable Isotope Probing

(2009) C. Luo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biphenyl-Metabolizing Bacteria in the Rhizosphere of Horseradish and Bulk Soil Contaminated by Polychlorinated Biphenyls as Revealed by Stable Isotope Probing

(2009) O. Uhlik et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil

(2009) Daniela M. Degelmann et al.   FEMS MICROBIOLOGY ECOLOGY

Soil organic carbon pools in the northern circumpolar permafrost region

(2009) C. Tarnocai et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge

(2009) Martin Hesselsoe et al.   ISME Journal

Integrating plant-soil interactions into global carbon cycle models

(2009) Nicholas J. Ostle et al.   JOURNAL OF ECOLOGY

Trends in the sources and sinks of carbon dioxide

(2009) Corinne Le Quéré et al.   Nature Geoscience

Ecosystem CO2 fluxes of arbuscular and ectomycorrhizal dominated vegetation types are differentially influenced by precipitation and temperature

(2009) Rodrigo Vargas et al.   NEW PHYTOLOGIST

Elevated CO2 stimulates marsh elevation gain, counterbalancing sea-level rise

(2009) J. A. Langley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-feeding of methane carbon among bacteria on rice roots revealed by DNA-stable isotope probing

(2009) Qiongfen Qiu et al.   Environmental Microbiology Reports

Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization

(2008) W. E. Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mechanisms of real and apparent priming effects and their dependence on soil microbial biomass and community structure: critical review

(2008) Е. Blagodatskaya et al.   BIOLOGY AND FERTILITY OF SOILS

Novel uncultured Chloroflexi dechlorinate perchloroethene to trans-dichloroethene in tidal flat sediments

(2008) Sandra Kittelmann et al.   ENVIRONMENTAL MICROBIOLOGY

Activity and composition of methanotrophic bacterial communities in planted rice soil studied by flux measurements, analyses of pmoA gene and stable isotope probing of phospholipid fatty acids

(2008) Minita Shrestha et al.   ENVIRONMENTAL MICROBIOLOGY

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands

(2008) Yin Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Resource availability influences the diversity of a functional group of heterotrophic soil bacteria

(2008) Silke Langenheder et al.   ENVIRONMENTAL MICROBIOLOGY

Selective stimulation of type I methanotrophs in a rice paddy soil by urea fertilization revealed by RNA-based stable isotope probing

(2008) Matthias Noll et al.   FEMS MICROBIOLOGY ECOLOGY

Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change

(2008) J. M. Talbot et al.   FUNCTIONAL ECOLOGY

Acclimation to temperature and temperature sensitivity of metabolism by ectomycorrhizal fungi

(2008) GLENNA M. MALCOLM et al.   GLOBAL CHANGE BIOLOGY

Soil temperature affects carbon allocation within arbuscular mycorrhizal networks and carbon transport from plant to fungus

(2008) CHRISTINE V. HAWKES et al.   GLOBAL CHANGE BIOLOGY

Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ

(2008) Qiongfen Qiu et al.   ISME Journal

Microbial contributions to climate change through carbon cycle feedbacks

(2008) Richard D Bardgett et al.   ISME Journal

Ectomycorrhizal fungi from Alaska and Pennsylvania: adaptation of mycelial respiratory response to temperature?

(2008) Juan C. López-Gutiérrez et al.   NEW PHYTOLOGIST

DNA-based stable isotope probing enables the identification of active bacterial endophytes in potatoes

(2008) Frank Rasche et al.   NEW PHYTOLOGIST

Fate of bacterial biomass derived fatty acids in soil and their contribution to soil organic matter

(2008) Reimo Kindler et al.   ORGANIC GEOCHEMISTRY

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)

(2008) Nico Jehmlich et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Emerging tools for measuring and modeling the in situ activity of soil extracellular enzymes

(2008) Matthew D. Wallenstein et al.   SOIL BIOLOGY & BIOCHEMISTRY