A LysR‐type transcriptional regulator controls the expression of numerous small RNAs in Agrobacterium tumefaciens

sRNA-mediated control in bacteria: An increasing diversity of regulatory mechanisms

(2020) Mikkel Girke Jørgensen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulation outside the box: new mechanisms for small RNAs

(2020) Kathrin S. Fröhlich et al.   MOLECULAR MICROBIOLOGY

Riboregulation in Nitrogen-Fixing Endosymbiotic Bacteria

(2020) Marta Robledo et al.   Microorganisms

Prevalence of small base-pairing RNAs derived from diverse genomic loci

(2020) Philip P. Adams et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Who’s in control? Regulation of metabolism and pathogenesis in space and time

(2020) Alyssa N King et al.   CURRENT OPINION IN MICROBIOLOGY

Arginine-rich small proteins with a domain of unknown function DUF1127 play a role in phosphate and carbon metabolism of Agrobacterium tumefaciens

(2020) Alexander Kraus et al.   JOURNAL OF BACTERIOLOGY

Short, Rich, and Powerful: a New Family of Arginine-Rich Small Proteins Have Outsized Impact in Agrobacterium tumefaciens

(2020) Melene A. Alakavuklar et al.   JOURNAL OF BACTERIOLOGY

A central role for the transcriptional regulator VtlR in small RNA-mediated gene regulation in Agrobacterium tumefaciens

(2020) James A. Budnick et al.   Scientific Reports

A novel plasmid‐transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum

(2019) Benjamin Diel et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial RNA Biology on a Genome Scale

(2018) Jens Hör et al.   MOLECULAR CELL

The LsrB protein is required for Agrobacterium tumefaciens interaction with host plants

(2018) Guirong Tang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Virulence of Agrobacterium tumefaciens requires lipid homeostasis mediated by the lysyl-phosphatidylglycerol hydrolase AcvB

(2018) Maike K. Groenewold et al.   MOLECULAR MICROBIOLOGY

A Small Regulatory RNA Controls Cell Wall Biosynthesis and Antibiotic Resistance

(2018) Jessica Borgmann et al.   mBio

A conserved α-proteobacterial small RNA contributes to osmoadaptation and symbiotic efficiency of rhizobia on legume roots

(2017) Marta Robledo et al.   ENVIRONMENTAL MICROBIOLOGY

Regulation of cysteine residues in LsrB proteins from Sinorhizobium meliloti under free-living and symbiotic oxidative stress

(2017) Guirong Tang et al.   ENVIRONMENTAL MICROBIOLOGY

An account of evolutionary specialization: the AbcR small RNAs in the Rhizobiales

(2017) Lauren M. Sheehan et al.   MOLECULAR MICROBIOLOGY

Dual-function small regulatory RNAs in bacteria

(2016) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

A Cluster of Four Homologous Small RNAs Modulates C1Metabolism and the Pyruvate Dehydrogenase Complex in Rhodobacter sphaeroides under Various Stress Conditions

(2015) Fabian Billenkamp et al.   JOURNAL OF BACTERIOLOGY

A LysR-family transcriptional regulator required for virulence inBrucella abortusis highly conserved among the α-proteobacteria

(2015) Lauren M. Sheehan et al.   MOLECULAR MICROBIOLOGY

Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence inAgrobacterium fabrumC58

(2015) M. Dequivre et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Stress-Induced Small RNA Modulates Alpha-Rhizobial Cell Cycle Progression

(2015) Marta Robledo et al.   PLoS Genetics

Transcriptional Regulator LsrB of Sinorhizobium meliloti Positively Regulates the Expression of Genes Involved in Lipopolysaccharide Biosynthesis

(2014) Guirong Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An Extended ΔCT-Method Facilitating Normalisation with Multiple Reference Genes Suited for Quantitative RT-PCR Analyses of Human Hepatocyte-Like Cells

(2014) Gesa Riedel et al.   PLoS One

Profound Impact of Hfq on Nutrient Acquisition, Metabolism and Motility in the Plant Pathogen Agrobacterium tumefaciens

(2014) Philip Möller et al.   PLoS One

Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region

(2014) Aaron Overlöper et al.   RNA Biology

Riboregulation in plant-associated α-proteobacteria

(2014) Anke Becker et al.   RNA Biology

The Sinorhizobium meliloti LysR family transcriptional factor LsrB is involved in regulation of glutathione biosynthesis

(2013) D. Lu et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens

(2013) Keunsub Lee et al.   PLoS One

Hfq Influences Multiple Transport Systems and Virulence in the Plant Pathogen Agrobacterium tumefaciens

(2012) I. Wilms et al.   JOURNAL OF BACTERIOLOGY

Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308

(2012) Clayton C. Caswell et al.   MOLECULAR MICROBIOLOGY

Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ

(2012) N. N. Mank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

(2012) Ina Wilms et al.   RNA Biology

Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

(2011) Florent Lassalle et al.   Genome Biology and Evolution

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

(2011) Ina Wilms et al.   MOLECULAR MICROBIOLOGY

New insights into an old story: Agrobacterium-induced tumour formation in plants by plant transformation

(2010) Andrea Pitzschke et al.   EMBO JOURNAL

The Burkholderia cenocepacia LysR-Type Transcriptional Regulator ShvR Influences Expression of Quorum-Sensing, Protease, Type II Secretion, and afc Genes

(2010) E. P. O'Grady et al.   JOURNAL OF BACTERIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins

(2008) S. E. Maddocks et al.   MICROBIOLOGY-SGM