Unraveling the Fecal Microbiota and Metagenomic Functional Capacity Associated with Feed Efficiency in Pigs

Live Probiotic Lactobacillus johnsonii BS15 Promotes Growth Performance and Lowers Fat Deposition by Improving Lipid Metabolism, Intestinal Development, and Gut Microflora in Broilers

(2017) Hesong Wang et al.   Frontiers in Microbiology

Pigs that are divergent in feed efficiency, differ in intestinal enzyme and nutrient transporter gene expression, nutrient digestibility and microbial activity

(2016) S. Vigors et al.   Animal

Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits

(2016) Yuliaxis Ramayo-Caldas et al.   ISME Journal

Human gut microbes impact host serum metabolome and insulin sensitivity

(2016) Helle Krogh Pedersen et al.   NATURE

Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness

(2016) Hui Yang et al.   Scientific Reports

The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood LipidsNovelty and Significance

(2015) Jingyuan Fu et al.   CIRCULATION RESEARCH

Genetic variation in efficiency to deposit fat and lean meat in Norwegian Landrace and Duroc pigs1

(2015) K. H. Martinsen et al.   JOURNAL OF ANIMAL SCIENCE

Early-life establishment of the swine gut microbiome and impact on host phenotypes

(2015) Núria Mach et al.   Environmental Microbiology Reports

Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

(2015) Arvind Venkataraman et al.   mBio

Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities

(2015) Markus Majaneva et al.   PLoS One

Phenotypic and genetic relationships between growth and feed intake curves and feed efficiency and amino acid requirements in the growing pig

(2014) R. Saintilan et al.   Animal

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Rethinking “Enterotypes”

(2014) Dan Knights et al.   Cell Host & Microbe

Replication of Obesity and Associated Signaling Pathways Through Transfer of Microbiota From Obese-Prone Rats

(2014) Frank A. Duca et al.   DIABETES

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations

(2014) Torey Looft et al.   ISME Journal

Assessment of fecal bacterial diversity among healthy piglets during the weaning transition

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

Improved nutrient digestibility and retention partially explains feed efficiency gains in pigs selected for low residual feed intake1

(2013) A. J. Harris et al.   JOURNAL OF ANIMAL SCIENCE

The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig

(2012) A. M. Walsh et al.   Animal

Host genetic and environmental effects on mouse intestinal microbiota

(2012) James H Campbell et al.   ISME Journal

Characterization of Pseudomonas mendocina LR capable of removing nitrogen from various nitrogen-contaminated water samples when cultivated with Cyperus alternifolius L.

(2012) Zhihang Feng et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin

(2012) H. B. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The intestinal microbiome of the pig

(2012) Richard Isaacson et al.   ANIMAL HEALTH RESEARCH REVIEWS

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Interaction Between Obesity and the Gut Microbiota: Relevance in Nutrition

(2011) Nathalie M. Delzenne et al.   Annual Review of Nutrition

Comparative fecal metagenomics unveils unique functional capacity of the swine gut

(2011) Regina Lamendella et al.   BMC MICROBIOLOGY

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera

(2011) M. G. Kalyuzhnaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov.

(2011) M. Morotomi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metastats: an improved statistical method for analysis of metagenomic data

(2011) Joseph N Paulson et al.   GENOME BIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY