Keeping modelling notebooks with TRACE: Good for you and good for environmental research and management support

A standard protocol for reporting species distribution models

(2020) Damaris Zurell et al.   ECOGRAPHY

Three questions to ask before using model outputs for decision support

(2020) Volker Grimm et al.   Nature Communications

Effective modeling for Integrated Water Resource Management: A guide to contextual practices by phases and steps and future opportunities

(2019) Jennifer Badham et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks

(2019) Adam Rule et al.   PLoS Computational Biology

How to make ecological models useful for environmental management

(2019) Nele Schuwirth et al.   ECOLOGICAL MODELLING

Cross-disciplinary links in environmental systems science: Current state and claimed needs identified in a meta-review of process models

(2018) Daniel Ayllón et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Strengthening the reporting of empirical simulation studies: Introducing the STRESS guidelines

(2018) Thomas Monks et al.   Journal of Simulation

Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail

(2018) Marcin Miłkowski et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Why Jupyter is data scientists’ computational notebook of choice

(2018) Jeffrey M. Perkel   NATURE

From cases to general principles: A call for theory development through agent-based modeling

(2018) Iris Lorscheid et al.   ECOLOGICAL MODELLING

An overview of the system dynamics process for integrated modelling of socio-ecological systems: Lessons on good modelling practice from five case studies

(2017) Sondoss Elsawah et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Replicating complex agent based models, a formidable task

(2017) Elizabeth Donkin et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Electronic lab notebooks: can they replace paper?

(2017) Samantha Kanza et al.   Journal of Cheminformatics

Our path to better science in less time using open data science tools

(2017) Julia S. Stewart Lowndes et al.   Nature Ecology & Evolution

Robustness analysis: Deconstructing computational models for ecological theory and applications

(2016) Volker Grimm et al.   ECOLOGICAL MODELLING

Ten Simple Rules for Taking Advantage of Git and GitHub

(2016) Yasset Perez-Riverol et al.   PLoS Computational Biology

Making Predictions in a Changing World: The Benefits of Individual-Based Ecology

(2014) Richard A. Stillman et al.   BIOSCIENCE

Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE

(2014) Volker Grimm et al.   ECOLOGICAL MODELLING

BEEHAVE: a systems model of honeybee colony dynamics and foraging to explore multifactorial causes of colony failure

(2014) Matthias A. Becher et al.   JOURNAL OF APPLIED ECOLOGY

Merging validation and evaluation of ecological models to ‘evaludation’: A review of terminology and a practical approach

(2013) Jacqueline Augusiak et al.   ECOLOGICAL MODELLING

Ten Simple Rules for Reproducible Computational Research

(2013) Geir Kjetil Sandve et al.   PLoS Computational Biology

Opening the ‘black box’ of simulations: increased transparency and effective communication through the systematic design of experiments

(2011) Iris Lorscheid et al.   Computational and Mathematical Organization Theory

Reproducible Research in Computational Science

(2011) R. D. Peng   SCIENCE

The ODD protocol: A review and first update

(2010) Volker Grimm et al.   ECOLOGICAL MODELLING

Proper Laboratory Notebook Practices: Protecting Your Intellectual Property

(2010) Jason T. Nickla et al.   Journal of Neuroimmune Pharmacology

Ecological models supporting environmental decision making: a strategy for the future

(2010) Amelie Schmolke et al.   TRENDS IN ECOLOGY & EVOLUTION