Ten Simple Rules for Taking Advantage of Git and GitHub

A Quick Introduction to Version Control with Git and GitHub

(2016) John D. Blischak et al.   PLoS Computational Biology

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

(2015) Yasset Perez-Riverol et al.   MOLECULAR & CELLULAR PROTEOMICS

No more hidden solutions in bioinformatics

(2015) Mauno Vihinen   NATURE

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

(2015) Yasset Perez-Riverol et al.   PROTEOMICS

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Ten Simple Rules for the Care and Feeding of Scientific Data

(2014) Alyssa Goodman et al.   PLoS Computational Biology

Ten Simple Rules for Effective Computational Research

(2014) James M. Osborne et al.   PLoS Computational Biology

A data repository and analysis framework for spontaneous neural activity recordings in developing retina

(2014) Stephen John Eglen et al.   GigaScience

On best practices in the development of bioinformatics software

(2014) Felipe da Veiga Leprevost et al.   Frontiers in Genetics

MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation

(2011) Laurent Gatto et al.   BIOINFORMATICS

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Credit where credit is overdue

(2009)   NATURE BIOTECHNOLOGY

A Quick Guide to Organizing Computational Biology Projects

(2009) William Stafford Noble   PLoS Computational Biology

OpenMS – An open-source software framework for mass spectrometry

(2008) Marc Sturm et al.   BMC BIOINFORMATICS