Spatio-temporal resolution of taxonomic and functional microbiome of Lonar soda lake of India reveals metabolic potential for bioremediation

Shotgun metagenome guided exploration of anthropogenically driven resistomic hotspots within Lonar soda lake of India

(2020) Jaya Chakraborty et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Nanopore sequencing: Review of potential applications in functional genomics

(2019) Nobuaki Kono et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Exploring the genetic potential of a fosmid metagenomic library from an oil-impacted mangrove sediment for metabolism of aromatic compounds

(2019) Sanderson Tarciso Pereira de Sousa et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Microbial diversity associated with the anaerobic sediments of a soda lake (Mono Lake, California, USA)

(2018) Patricia Rojas et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Freshwater salinization syndrome on a continental scale

(2018) Sujay S. Kaushal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of novel glycosyl hydrolases discovered by cell wall glycan directed monoclonal antibody screening and metagenome analysis of maize aerial root mucilage

(2018) Tania Pozzo et al.   PLoS One

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Reducing Salinity by Flooding an Extremely Alkaline and Saline Soil Changes the Bacterial Community but Its Effect on the Archaeal Community Is Limited

(2017) Arit S. de León-Lorenzana et al.   Frontiers in Microbiology

Microbial diversity in the hypersaline Lake Meyghan, Iran

(2017) Ali Naghoni et al.   Scientific Reports

Molecular perspectives and recent advances in microbial remediation of persistent organic pollutants

(2016) Jaya Chakraborty et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Predicting taxonomic and functional structure of microbial communities in acid mine drainage

(2016) Jialiang Kuang et al.   ISME Journal

Chemical assessment of Sambhar Soda Lake, a Ramsar site in India

(2016) M. N. Cherekar et al.   Journal of Water Chemistry and Technology

Metagenomic approach to characterize soil microbial diversity of Phumdi at Loktak Lake

(2016) S. Puranik et al.   WATER SCIENCE AND TECHNOLOGY

Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock

(2016) Dhiraj Paul et al.   Frontiers in Microbiology

Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

(2016) Charlotte D. Vavourakis et al.   Frontiers in Microbiology

Metagenomics for the discovery of pollutant degrading enzymes

(2015) Lisa Ufarté et al.   BIOTECHNOLOGY ADVANCES

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Metagenomic analysis of oxygenases from activated sludge

(2014) Niti B. Jadeja et al.   BIORESOURCE TECHNOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Drainage systems of Lonar Crater, India: Contributions to Lonar Lake hydrology and crater degradation

(2013) Goro Komatsu et al.   PLANETARY AND SPACE SCIENCE

Integrated Metagenomic and Physiochemical Analyses to Evaluate the Potential Role of Microbes in the Sand Filter of a Drinking Water Treatment System

(2013) Yaohui Bai et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Metagenomic analysis of the pinewood nematode microbiome reveals a symbiotic relationship critical for xenobiotics degradation

(2013) Xin-Yue Cheng et al.   Scientific Reports

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

(2012) Andreas Wilke et al.   BMC BIOINFORMATICS

Microbiology of Lonar Lake and other soda lakes

(2012) Chakkiath Paul Antony et al.   ISME Journal

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Diversity of Lonar Soda Lake of India

(2011) Kshipra B. Deshmukh et al.   INDIAN JOURNAL OF MICROBIOLOGY

Thioalkalivibrio sulfidiphilus sp. nov., a haloalkaliphilic, sulfur-oxidizing gammaproteobacterium from alkaline habitats

(2011) D. Y. Sorokin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Microbial Sulfur Cycle at Extremely Haloalkaline Conditions of Soda Lakes

(2011) Dimitry Y. Sorokin et al.   Frontiers in Microbiology

Coordinated approaches to quantify long-term ecosystem dynamics in response to global change

(2010) YIQI LUO et al.   GLOBAL CHANGE BIOLOGY

Active methylotrophs in the sediments of Lonar Lake, a saline and alkaline ecosystem formed by meteor impact

(2010) Chakkiath Paul Antony et al.   ISME Journal

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Metagenomic Pyrosequencing and Microbial Identification

(2009) J. F. Petrosino et al.   CLINICAL CHEMISTRY

Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget - France)

(2009) Didier Debroas et al.   ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS