Integrated Metagenomic and Physiochemical Analyses to Evaluate the Potential Role of Microbes in the Sand Filter of a Drinking Water Treatment System

Abundance of ammonia-oxidizing bacteria and archaea in industrial and domestic wastewater treatment systems

(2012) Yaohui Bai et al.   FEMS MICROBIOLOGY ECOLOGY

Heterogeneity of ammonia-oxidizing community structures in a pilot-scale drinking water biofilter

(2012) Shuo Feng et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

Structuring of Bacterioplankton Diversity in a Large Tropical Bay

(2012) Gustavo B. Gregoracci et al.   PLoS One

Bacterial Communities in the Sediments of Dianchi Lake, a Partitioned Eutrophic Waterbody in China

(2012) Yaohui Bai et al.   PLoS One

Phylogenetic and functional diversity of metagenomic libraries of phenol degrading sludge from petroleum refinery wastewater treatment system

(2012) Cynthia C Silva et al.   AMB Express

Chlorine residuals and haloacetic acid reduction in rapid sand filtration

(2011) Yi-Hsueh Chuang et al.   CHEMOSPHERE

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

Genome Sequence of an Ammonia-Oxidizing Soil Archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1

(2011) B. K. Kim et al.   JOURNAL OF BACTERIOLOGY

Pyrosequencing Demonstrated Complex Microbial Communities in a Membrane Filtration System for a Drinking Water Treatment Plant

(2011) Soondong Kwon et al.   MICROBES AND ENVIRONMENTS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

An uncertain role for Cu(II) in stimulating Mn(II) oxidation by Leptothrix discophora SS-1

(2010) Iman A. El Gheriany et al.   ARCHIVES OF MICROBIOLOGY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea

(2010) Matthew E. Rhodes et al.   ENVIRONMENTAL MICROBIOLOGY

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

(2010) Marc Weber et al.   ISME Journal

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Autotrophic ammonia oxidation by soil thaumarchaea

(2010) L.-M. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predominance of ammonia-oxidizing archaea on granular activated carbon used in a full-scale advanced drinking water treatment plant

(2010) Ikuro Kasuga et al.   WATER RESEARCH

Identification of a Two-Component Regulatory Pathway Essential for Mn(II) Oxidation in Pseudomonas putida GB-1

(2009) K. Geszvain et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonia-oxidizing archaea involved in nitrogen removal

(2009) Jia You et al.   WATER RESEARCH

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Biodiversity of amoebae and amoebae-resisting bacteria in a drinking water treatment plant

(2008) Vincent Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH