Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 22, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-02-26
DOI
10.1186/s12864-021-07427-2
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes
- (2020) Xu Zhang et al. BMC PLANT BIOLOGY
- The growth of tea
- (2019) Liam Drew NATURE
- Decoding and analysis of organelle genomes of Indian tea (Camellia assamica) for phylogenetic confirmation
- (2019) Hukam C. Rawal et al. GENOMICS
- Saffron (Crocus sativus) is an autotriploid that evolved in Attica (Greece) from wild Crocus cartwrightianus
- (2019) Zahra Nemati et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica
- (2019) Fen Zhang et al. Scientific Data
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Draft genome sequence ofCamellia sinensisvar.sinensisprovides insights into the evolution of the tea genome and tea quality
- (2018) Chaoling Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative analysis of flower-meristem-identity gene APETALA2 ( AP2 ) codon in different plant species
- (2018) Yan-qing WU et al. Journal of Integrative Agriculture
- Organellar genome assembly methods and comparative analysis of horticultural plants
- (2018) Xuelin Wang et al. Horticulture Research
- Analysis of codon usage patterns in Morus notabilis based on genome and transcriptome data
- (2017) Yan Wen et al. GENOME
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family
- (2017) Xiang-Qin Yu et al. NEW PHYTOLOGIST
- Gene losses and partial deletion of small single-copy regions of the chloroplast genomes of two hemiparasitic Taxillus species
- (2017) Ying Li et al. Scientific Reports
- Comparative study on cross-compatibility between Camellia sinensis var. sinensis (China type) and C. sinensis var. assamica (Assam type) tea
- (2016) M Prathibhani Chamidha Kumarihami H et al. African Journal of Agricultural Research
- Strategies for complete plastid genome sequencing
- (2016) Alex D. Twyford et al. Molecular Ecology Resources
- Indications for Three Independent Domestication Events for the Tea Plant (Camellia sinensis (L.) O. Kuntze) and New Insights into the Origin of Tea Germplasm in China and India Revealed by Nuclear Microsatellites
- (2016) M. K. Meegahakumbura et al. PLoS One
- Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing
- (2016) Hua Yang et al. PLoS One
- The impacts of polyploidy, geographic and ecological isolations on the diversification of Panax (Araliaceae)
- (2015) Feng-Xue Shi et al. BMC PLANT BIOLOGY
- The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating
- (2015) M. Rousseau-Gueutin et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus
- (2015) Peng-Fei Ma et al. Scientific Reports
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Plant DNA barcoding: from gene to genome
- (2014) Xiwen Li et al. BIOLOGICAL REVIEWS
- Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships
- (2014) Hui Huang et al. BMC EVOLUTIONARY BIOLOGY
- Investigating the Path of Plastid Genome Degradation in an Early-Transitional Clade of Heterotrophic Orchids, and Implications for Heterotrophic Angiosperms
- (2014) Craig F. Barrett et al. MOLECULAR BIOLOGY AND EVOLUTION
- Possible Loss of the Chloroplast Genome in the Parasitic Flowering Plant Rafflesia lagascae (Rafflesiaceae)
- (2014) Jeanmaire Molina et al. MOLECULAR BIOLOGY AND EVOLUTION
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- PAMLX: A Graphical User Interface for PAML
- (2013) B. Xu et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Database resources of the National Center for Biotechnology Information
- (2013) NUCLEIC ACIDS RESEARCH
- Seedling Lethal1, a Pentatricopeptide Repeat Protein Lacking an E/E+ or DYW Domain in Arabidopsis, Is Involved in Plastid Gene Expression and Early Chloroplast Development
- (2013) Y. J. Pyo et al. PLANT PHYSIOLOGY
- Comparative Chloroplast Genomes of Camellia Species
- (2013) Jun-Bo Yang et al. PLoS One
- CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
- (2012) Chang Liu et al. BMC GENOMICS
- Evolutionary relationship of Panax ginseng and P. quinquefolius inferred from sequencing and comparative analysis of expressed sequence tags
- (2012) Hong-Il Choi et al. GENETIC RESOURCES AND CROP EVOLUTION
- Mutational Dynamics of Aroid Chloroplast Genomes
- (2012) Ibrar Ahmed et al. Genome Biology and Evolution
- Classification of Camellia (Theaceae) Species Using Leaf Architecture Variations and Pattern Recognition Techniques
- (2012) Hongfei Lu et al. PLoS One
- Development of Reproducible EST-derived SSR Markers and Assessment of Genetic Diversity in Panax ginseng Cultivars and Related Species
- (2012) Hong-Il Choi et al. Journal of Ginseng Research
- When is enough, enough in phylogenetics? A case in point from Hordeum (Poaceae)
- (2011) Gitte Petersen et al. CLADISTICS
- The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
- (2011) Susann Wicke et al. PLANT MOLECULAR BIOLOGY
- Nuclear and Chloroplast Microsatellites Show Multiple Introductions in the Worldwide Invasion History of Common Ragweed, Ambrosia artemisiifolia
- (2011) Myriam Gaudeul et al. PLoS One
- Clusters of Nucleotide Substitutions and Insertion/Deletion Mutations Are Associated with Repeat Sequences
- (2011) Michael J. McDonald et al. PLOS BIOLOGY
- Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences
- (2010) Zhenhua Peng et al. BMC PLANT BIOLOGY
- Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus
- (2010) R. K. Jansen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage
- (2010) M. M. Guisinger et al. MOLECULAR BIOLOGY AND EVOLUTION
- Polyploidy and angiosperm diversification
- (2009) Douglas E. Soltis et al. AMERICAN JOURNAL OF BOTANY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic Relationships
- (2009) S. Tangphatsornruang et al. DNA RESEARCH
- Genomewide Association between Insertions/Deletions and the Nucleotide Diversity in Bacteria
- (2009) L. Zhu et al. MOLECULAR BIOLOGY AND EVOLUTION
- Potential DNA transfer from the chloroplast to the nucleus in Eryngium alpinum
- (2009) YAMAMA NACIRI et al. Molecular Ecology Resources
- Polyploid origins in Gynostemma pentaphyllum (Cucurbitaceae) inferred from multiple gene sequences
- (2009) Ling-Yan Jiang et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
- (2008) Dacheng Tian et al. NATURE
- Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
- (2008) Richard Cronn et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now