Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing

Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

(2015) Yuling Tai et al.   BMC PLANT BIOLOGY

Genetic structure ofMiscanthus sinensisandMiscanthus sacchariflorusin Japan indicates a gradient of bidirectional but asymmetric introgression

(2015) Lindsay V. Clark et al.   JOURNAL OF EXPERIMENTAL BOTANY

Single-nucleotide polymorphism identification and genotyping in Camelina sativa

(2015) Ravinder Singh et al.   MOLECULAR BREEDING

Large-Scale SNP Discovery and Genotyping for Constructing a High-Density Genetic Map of Tea Plant Using Specific-Locus Amplified Fragment Sequencing (SLAF-seq)

(2015) Jian-Qiang Ma et al.   PLoS One

Construction of High-Density Genetic Map in Barley through Restriction-Site Associated DNA Sequencing

(2015) Gaofeng Zhou et al.   PLoS One

Targeted Sequencing Reveals Large-Scale Sequence Polymorphism in Maize Candidate Genes for Biomass Production and Composition

(2015) Moses M. Muraya et al.   PLoS One

Phylogeny of Morella rubra and Its Relatives (Myricaceae) and Genetic Resources of Chinese Bayberry Using RAD Sequencing

(2015) Luxian Liu et al.   PLoS One

Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

(2014) Hui Huang et al.   BMC EVOLUTIONARY BIOLOGY

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly

(2014) Amit A Deokar et al.   BMC GENOMICS

Development and characterization of single nucleotide polymorphism markers in Camellia sinensis (Theaceae)

(2014) C.C. Zhang et al.   GENETICS AND MOLECULAR RESEARCH

Transcriptome-Wide Analysis of SAMe Superfamily to Novelty Phosphoethanolamine N-Methyltransferase Copy in Lonicera japonica

(2014) Yuan Yuan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phylogenomic analyses reveal latitudinal population structure and polymorphisms in heat stress genes in the North Atlantic snailNucella lapillus

(2014) Nathaniel D. Chu et al.   MOLECULAR ECOLOGY

De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach

(2013) Venkatramana Pegadaraju et al.   BMC GENOMICS

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing

(2013) X. Q. Wang et al.   Molecular Ecology Resources

Genome Size Variation among and within Camellia Species by Using Flow Cytometric Analysis

(2013) Hui Huang et al.   PLoS One

Comparative Chloroplast Genomes of Camellia Species

(2013) Jun-Bo Yang et al.   PLoS One

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Phylogeography of Camellia taliensis (Theaceae) inferred from chloroplast and nuclear DNA: insights into evolutionary history and conservation

(2012) Yang Liu et al.   BMC EVOLUTIONARY BIOLOGY

Genome-wide patterns of divergence and gene flow across a butterfly radiation

(2012) Nicola J. Nadeau et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Sequence-Based Genotyping for Marker Discovery and Co-Dominant Scoring in Germplasm and Populations

(2012) Hoa T. Truong et al.   PLoS One

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

(2011) Shikai Liu et al.   BMC GENOMICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

(2011) Yada Chutimanitsakun et al.   BMC GENOMICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Genetic mechanisms underlying the methylation level of anthocyanins in grape (Vitis vinifera L.)

(2011) Alexandre Fournier-Level et al.   BMC PLANT BIOLOGY

Development of genome-wide SNP assays for rice

(2011) Susan R. McCouch et al.   BREEDING SCIENCE

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Diversity distribution and population structure of tea germplasms in China revealed by EST-SSR markers

(2011) Ming-Zhe Yao et al.   Tree Genetics & Genomes

The Mining of Citrus EST-SNP and Its Application in Cultivar Discrimination

(2010) Dong JIANG et al.   Agricultural Sciences in China

AFLP-Based Genetic Diversity Assessment of Commercially Important Tea Germplasm in India

(2010) R. K. Sharma et al.   BIOCHEMICAL GENETICS

The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication

(2010) Chun Zhai et al.   NEW PHYTOLOGIST

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding

(2010) Jafar A. Mammadov et al.   THEORETICAL AND APPLIED GENETICS

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Foliar sclereids in tea and its wild allies, with reference to their taxonomy

(2009) Wei Zhang et al.   AUSTRALIAN SYSTEMATIC BOTANY

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.)

(2009) Ram Sharma et al.   BMC PLANT BIOLOGY

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery

(2009) Sebastian H Eck et al.   GENOME BIOLOGY

Development of genomic resources for Citrus clementina: characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences

(2008) Javier Terol et al.   BMC GENOMICS