Azadirachta indica MicroRNAs: Genome-Wide Identification, Target Transcript Prediction, and Expression Analyses

Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana

(2018) Jia He et al.   PLoS Genetics

Overexpression of miR529a confers enhanced resistance to oxidative stress in rice (Oryza sativa L.)

(2017) Erkui Yue et al.   PLANT CELL REPORTS

Transcriptome-wide identification of Rauvolfia serpentina microRNAs and prediction of their potential targets

(2016) Pravin Prakash et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

MicroRNA858 is a potential regulator of phenylpropanoid pathway and plant development in Arabidopsis

(2016) Deepika Sharma et al.   PLANT PHYSIOLOGY

Gedunin inhibits pancreatic cancer by altering sonic hedgehog signaling pathway

(2016) Ramadevi Subramani et al.   Oncotarget

Anticancer properties of nimbolide and pharmacokinetic considerations to accelerate its development

(2016) Lingzhi Wang et al.   Oncotarget

An Improved Genome Assembly of Azadirachta indica A. Juss.

(2016) Neeraja M. Krishnan et al.   G3-Genes Genomes Genetics

Triterpenoid profiling and functional characterization of the initial genes involved in isoprenoid biosynthesis in neem (Azadirachta indica)

(2015) Avinash Pandreka et al.   BMC PLANT BIOLOGY

Identification of conserved and novel microRNAs in Catharanthus roseus by deep sequencing and computational prediction of their potential targets

(2015) Pravin Prakash et al.   GENE

Gedunin and Azadiradione: Human Pancreatic Alpha-Amylase Inhibiting Limonoids from Neem (Azadirachta indica) as Anti-Diabetic Agents

(2015) Sudha Ponnusamy et al.   PLoS One

Comprehensive analyses of genomes, transcriptomes and metabolites of neem tree

(2015) Nagesh A. Kuravadi et al.   PeerJ

Copper stress induces the differential expression of microRNAs in non-heading Chinese cabbage

(2014) J. Ren et al.   BIOLOGIA PLANTARUM

Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine

(2014) Jun Meng et al.   BMC BIOINFORMATICS

Bioinformatic identification and experimental validation of miRNAs from foxtail millet (Setaria italica)

(2014) Jun Han et al.   GENE

Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing

(2014) Mukesh Jain et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcripts profiling of fruit mesocarp and endocarp relevant to secondary metabolism by suppression subtractive hybridization in Azadirachta indica (neem)

(2014) Lokesh K. Narnoliya et al.   MOLECULAR BIOLOGY REPORTS

Carica papaya MicroRNAs Are Responsive to Papaya meleira virus Infection

(2014) Paolla M. V. Abreu et al.   PLoS One

Subtractive transcriptomes of fruit and leaf reveal differential representation of transcripts in Azadirachta indica

(2014) Raja Rajakani et al.   Tree Genetics & Genomes

Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer

(2013) Chunfang Li et al.   BMC GENOMICS

Computational identification of microRNAs in the strawberry (Fragaria×ananassa) genome sequence and validation of their precise sequences by miR-RACE

(2013) Jian Han et al.   GENE

Repression of Growth Regulating Factors by the MicroRNA396 Inhibits Cell Proliferation by UV-B Radiation in Arabidopsis Leaves

(2013) R. Casadevall et al.   PLANT CELL

Integrative Analysis of miRNA and mRNA Profiles in Response to Ethylene in Rose Petals during Flower Opening

(2013) Haixia Pei et al.   PLoS One

C-mii: a tool for plant miRNA and target identification

(2012) Somrak Numnark et al.   BMC GENOMICS

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica

(2012) Neeraja M Krishnan et al.   BMC GENOMICS

Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets

(2012) Virginie Gébelin et al.   BMC PLANT BIOLOGY

MiRmat: Mature microRNA Sequence Prediction

(2012) Chenfeng He et al.   PLoS One

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences

(2011) Yonggan Wu et al.   BMC BIOINFORMATICS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

cis- andtrans-Regulation of miR163 and Target Genes Confers Natural Variation of Secondary Metabolites in TwoArabidopsisSpecies and Their Allopolyploids

(2011) Danny W-K. Ng et al.   PLANT CELL

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

Identification and Characterization of microRNAs from Peanut (Arachis hypogaea L.) by High-Throughput Sequencing

(2011) Xiaoyuan Chi et al.   PLoS One

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR

(2009) Junli Feng et al.   GENE

Current tools for the identification of miRNA genes and their targets

(2009) N. D. Mendes et al.   NUCLEIC ACIDS RESEARCH

The Azadirachtin Story

(2008) Gemma E. Veitch et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

CID-miRNA: A web server for prediction of novel miRNA precursors in human genome

(2008) Sonika Tyagi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Big impacts by small RNAs in plant development

(2008) George Chuck et al.   CURRENT OPINION IN PLANT BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL