Comparative Genomics of Xanthomonas citri pv. citri A* Pathotype Reveals Three Distinct Clades with Varying Plasmid Distribution
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Title
Comparative Genomics of Xanthomonas citri pv. citri A* Pathotype Reveals Three Distinct Clades with Varying Plasmid Distribution
Authors
Keywords
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Journal
Microorganisms
Volume 8, Issue 12, Pages 1947
Publisher
MDPI AG
Online
2020-12-09
DOI
10.3390/microorganisms8121947
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- (2020) William Cenens et al. PLoS Pathogens
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- (2018) Shuo Duan et al. MOLECULAR PLANT PATHOLOGY
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- (2018) Mustafa O. Jibrin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2018) Xia Yan et al. RESEARCH IN MICROBIOLOGY
- Evolution of copper resistance in the kiwifruit pathogenPseudomonas syringaepv.actinidiaethrough acquisition of integrative conjugative elements and plasmids
- (2017) Elena Colombi et al. ENVIRONMENTAL MICROBIOLOGY
- Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements
- (2017) D. Richard et al. MOLECULAR ECOLOGY
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- Using Ecology, Physiology, and Genomics to Understand Host Specificity inXanthomonas
- (2016) Marie-Agnès Jacques et al. Annual Review of Phytopathology
- Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island
- (2016) Eduard Fadeev et al. Frontiers in Microbiology
- Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
- (2015) Ryan R. Wick et al. BIOINFORMATICS
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- (2015) Andrew J. Page et al. BIOINFORMATICS
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- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas
- (2015) Yunzeng Zhang et al. ISME Journal
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- (2015) Hongge Jia et al. PLANT BIOTECHNOLOGY JOURNAL
- Bacterial killing via a type IV secretion system
- (2015) Diorge P. Souza et al. Nature Communications
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
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- (2014) Boris A. Vinatzer et al. Annual Review of Phytopathology
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
- (2014) Nicholas J. Croucher et al. NUCLEIC ACIDS RESEARCH
- Correction: A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas
- (2014) Ahmed Hajri et al. PLoS One
- A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage
- (2014) Olivier Pruvost et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Revisiting the TALE repeat
- (2014) Dong Deng et al. Protein & Cell
- Correction: A Pathogen Type III Effector with a Novel E3 Ubiquitin Ligase Architecture
- (2013) Alexander U. Singer et al. PLoS Pathogens
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
- (2012) Nicholas J. Loman et al. NATURE REVIEWS MICROBIOLOGY
- Molecular Characterization of Copper Resistance Genes from Xanthomonas citri subsp.citriand Xanthomonas alfalfae subsp. citrumelonis
- (2011) Franklin Behlau et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- High-Throughput Screening and Analysis of Genes ofXanthomonas citrisubsp.citriInvolved in Citrus Canker Symptom Development
- (2011) Qing Yan et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Rapid Pneumococcal Evolution in Response to Clinical Interventions
- (2011) N. J. Croucher et al. SCIENCE
- XanthomonasAvrBs3 Family-Type III Effectors: Discovery and Function
- (2010) Jens Boch et al. Annual Review of Phytopathology
- Microreview: Type IV secretion systems: versatility and diversity in function
- (2010) Karin Wallden et al. CELLULAR MICROBIOLOGY
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- (2010) F. Malamud et al. MICROBIOLOGY-SGM
- The distribution and spread of citrus canker in Emerald, Australia
- (2009) C. F. Gambley et al. AUSTRALASIAN PLANT PATHOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Identification ofXanthomonas citrissp.citrihost specificity genes in a heterologous expression host
- (2009) MYRIAN RYBAK et al. MOLECULAR PLANT PATHOLOGY
- The Origins of Plant Pathogens in Agro-Ecosystems
- (2008) Eva H. Stukenbrock et al. Annual Review of Phytopathology
- News from the frontline: recent insights into PAMP-triggered immunity in plants
- (2008) Benjamin Schwessinger et al. CURRENT OPINION IN PLANT BIOLOGY
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