Comparative Genomics of Xanthomonas citri pv. citri A* Pathotype Reveals Three Distinct Clades with Varying Plasmid Distribution

Bactericidal type IV secretion system homeostasis in Xanthomonas citri

(2020) William Cenens et al.   PLoS Pathogens

Skirmish or war: the emergence of agricultural plant pathogens

(2020) Honour C McCann   CURRENT OPINION IN PLANT BIOLOGY

Multiple Recombination Events Drive the Current Genetic Structure of Xanthomonas perforans in Florida

(2019) Sujan Timilsina et al.   Frontiers in Microbiology

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Bacteria-Killing Type IV Secretion Systems

(2019) Germán G. Sgro et al.   Frontiers in Microbiology

Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses

(2019) José S. L. Patané et al.   BMC GENOMICS

An efficient method to clone TAL effector genes from Xanthomonas oryzae using Gibson assembly

(2019) Chenhao Li et al.   MOLECULAR PLANT PATHOLOGY

Analysis of Theileria orientalis draft genome sequences reveals potential species-level divergence of the Ikeda, Chitose and Buffeli genotypes

(2018) Daniel R. Bogema et al.   BMC GENOMICS

Functional characterization of the citrus canker susceptibility gene CsLOB1

(2018) Shuo Duan et al.   MOLECULAR PLANT PATHOLOGY

The Type III Secretion Chaperone HpaB Controls the Translocation of Effector and Noneffector Proteins From Xanthomonas campestris pv. vesicatoria

(2018) Felix Scheibner et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genomic Inference of Recombination-Mediated Evolution in Xanthomonas euvesicatoria and X. perforans

(2018) Mustafa O. Jibrin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A type III effector XopL8004 is vital for Xanthomonas campestris pathovar campestris to regulate plant immunity

(2018) Xia Yan et al.   RESEARCH IN MICROBIOLOGY

Evolution of copper resistance in the kiwifruit pathogenPseudomonas syringaepv.actinidiaethrough acquisition of integrative conjugative elements and plasmids

(2017) Elena Colombi et al.   ENVIRONMENTAL MICROBIOLOGY

Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements

(2017) D. Richard et al.   MOLECULAR ECOLOGY

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Using Ecology, Physiology, and Genomics to Understand Host Specificity inXanthomonas

(2016) Marie-Agnès Jacques et al.   Annual Review of Phytopathology

Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island

(2016) Eduard Fadeev et al.   Frontiers in Microbiology

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas

(2015) Yunzeng Zhang et al.   ISME Journal

Modification of the PthA4 effector binding elements in Type I CsLOB1 promoter using Cas9/sgRNA to produce transgenic Duncan grapefruit alleviating XccΔpthA4:dCsLOB1.3 infection

(2015) Hongge Jia et al.   PLANT BIOTECHNOLOGY JOURNAL

Bacterial killing via a type IV secretion system

(2015) Diorge P. Souza et al.   Nature Communications

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

(2015) Xavier Didelot et al.   PLoS Computational Biology

Harnessing Population Genomics to Understand How Bacterial Pathogens Emerge, Adapt to Crop Hosts, and Disseminate

(2014) Boris A. Vinatzer et al.   Annual Review of Phytopathology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Correction: A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas

(2014) Ahmed Hajri et al.   PLoS One

A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage

(2014) Olivier Pruvost et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Revisiting the TALE repeat

(2014) Dong Deng et al.   Protein & Cell

Correction: A Pathogen Type III Effector with a Novel E3 Ubiquitin Ligase Architecture

(2013) Alexander U. Singer et al.   PLoS Pathogens

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity

(2012) Nicholas J. Loman et al.   NATURE REVIEWS MICROBIOLOGY

Molecular Characterization of Copper Resistance Genes from Xanthomonas citri subsp.citriand Xanthomonas alfalfae subsp. citrumelonis

(2011) Franklin Behlau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-Throughput Screening and Analysis of Genes ofXanthomonas citrisubsp.citriInvolved in Citrus Canker Symptom Development

(2011) Qing Yan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

XanthomonasAvrBs3 Family-Type III Effectors: Discovery and Function

(2010) Jens Boch et al.   Annual Review of Phytopathology

Microreview: Type IV secretion systems: versatility and diversity in function

(2010) Karin Wallden et al.   CELLULAR MICROBIOLOGY

The Xanthomonas axonopodis pv. citri flagellum is required for mature biofilm and canker development

(2010) F. Malamud et al.   MICROBIOLOGY-SGM

The distribution and spread of citrus canker in Emerald, Australia

(2009) C. F. Gambley et al.   AUSTRALASIAN PLANT PATHOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification ofXanthomonas citrissp.citrihost specificity genes in a heterologous expression host

(2009) MYRIAN RYBAK et al.   MOLECULAR PLANT PATHOLOGY

The Origins of Plant Pathogens in Agro-Ecosystems

(2008) Eva H. Stukenbrock et al.   Annual Review of Phytopathology

News from the frontline: recent insights into PAMP-triggered immunity in plants

(2008) Benjamin Schwessinger et al.   CURRENT OPINION IN PLANT BIOLOGY