Domestication affects the composition, diversity, and co-occurrence of the cereal seed microbiota

New Insight into the Composition of Wheat Seed Microbiota

(2020) Agnieszka Kuźniar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Priority effects of wheat seed endophytes on a rhizosphere symbiosis

(2019) Mary E. Ridout et al.   SYMBIOSIS

The plant microbiome: Exploration of plant-microbe interactions for improving agricultural productivity

(2019) Nabil Hegazi et al.   Journal of Advanced Research

Assessment of the structural and functional diversities of plant microbiota: Achievements and challenges – A review

(2019) Anton Hartmann et al.   Journal of Advanced Research

Seeds of native alpine plants host unique microbial communities embedded in cross-kingdom networks

(2019) Birgit Wassermann et al.   Microbiome

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia

(2019) Juan E. Pérez-Jaramillo et al.   Microbiome

Seed interior microbiome of rice genotypes indigenous to three agroecosystems of Indo-Burma biodiversity hotspot

(2019) Garima Raj et al.   BMC GENOMICS

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Saving seed microbiomes

(2018) Gabriele Berg et al.   ISME Journal

Insights into Endophytic Bacterial Community Structures of Seeds Among Various Oryza sativa L. Rice Genotypes

(2018) Jun Zhang et al.   JOURNAL OF PLANT GROWTH REGULATION

Consistent associations with beneficial bacteria in the seed endosphere of barley ( Hordeum vulgare L.)

(2018) MD Mahafizur Rahman et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Cophylogenetic analyses reveal extensive host-shift speciation in a highly specialized and host-specific symbiont system

(2017) Jorge Doña et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The seed endosphere of Anadenanthera colubrina is inhabited by a complex microbiota, including Methylobacteriumspp. and Staphylococcus spp. with potential plant-growth promoting activities

(2017) Pasquale Alibrandi et al.   PLANT AND SOIL

The seed microbiome: Origins, interactions, and impacts

(2017) Eric B. Nelson   PLANT AND SOIL

Evolution of the Crop Rhizosphere: Impact of Domestication on Root Exudates in Tetraploid Wheat (Triticum turgidum L.)

(2017) Anna Iannucci et al.   Frontiers in Plant Science

Exploring potential bacterial and fungal biocontrol agents transmitted from seeds to sprouts of wheat

(2016) Yali Huang et al.   BIOLOGICAL CONTROL

Cophylogenetic patterns are uncorrelated between two lineages of parasites on the same hosts

(2016) Andrew D. Sweet et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria

(2016) Ian D. E. A. Lidbury et al.   ENVIRONMENTAL MICROBIOLOGY

Characteristics of the root system in the diploid genome donors of hexaploid wheat (Triticum aestivum L.)

(2016) Harun Bektas et al.   GENETIC RESOURCES AND CROP EVOLUTION

Wheat seeds harbour bacterial endophytes with potential as plant growth promoters and biocontrol agents of Fusarium graminearum

(2016) Silvana Díaz Herrera et al.   MICROBIOLOGICAL RESEARCH

Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus

(2016) Jonathan W. Leff et al.   NEW PHYTOLOGIST

Wheat seed embryo excision enables the creation of axenic seedlings and Koch’s postulates testing of putative bacterial endophytes

(2016) Rebekah J. Robinson et al.   Scientific Reports

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Terroir is a key driver of seed-associated microbial assemblages

(2015) Stephanie Klaedtke et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Bacterial networks and co-occurrence relationships in the lettuce root microbiota

(2014) Massimiliano Cardinale et al.   ENVIRONMENTAL MICROBIOLOGY

Interkingdom Transfer of the Acne-Causing Agent, Propionibacterium acnes, from Human to Grapevine

(2014) Andrea Campisano et al.   MOLECULAR BIOLOGY AND EVOLUTION

Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome onTriticumandBrassicaseeds

(2014) Matthew G. Links et al.   NEW PHYTOLOGIST

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

(2014) Sascha Truyens et al.   Environmental Microbiology Reports

Differences between the rhizosphere microbiome of Beta vulgaris ssp. maritima—ancestor of all beet crops—and modern sugar beets

(2014) Christin Zachow et al.   Frontiers in Microbiology

Pyrosequencing detects human and animal pathogenic taxa in the grapevine endosphere

(2014) Sohail Yousaf et al.   Frontiers in Microbiology

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Synthesis and Characterization of Advanced Durum Wheat Hybrids and Addition Lines with Thinopyrum Chromosomes

(2013) P. P. Jauhar et al.   JOURNAL OF HEREDITY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Aegilops tauschiisingle nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

(2013) Jirui Wang et al.   NEW PHYTOLOGIST

PACo: A Novel Procrustes Application to Cophylogenetic Analysis

(2013) Juan Antonio Balbuena et al.   PLoS One

Testing for coevolutionary diversification: linking pattern with process

(2013) David M. Althoff et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic diversity of Tunisian accessions ofAegilops geniculataRoth and durum wheats (Triticum durumDesf.) using RAPD markers

(2013) Asma Mahjoub et al.   ACTA BOTANICA GALLICA

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Drought-tolerant endophytic actinobacteria promote growth of wheat (Triticum aestivum) under water stress conditions

(2012) Mahesh S. Yandigeri et al.   PLANT GROWTH REGULATION

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology

(2011) David Johnston-Monje et al.   PLoS One

Experimental factors affecting PCR-based estimates of microbial species richness and evenness

(2010) Anna Engelbrektson et al.   ISME Journal

Seed survival in soil: interacting effects of predation, dormancy and the soil microbial community

(2010) James W. Dalling et al.   JOURNAL OF ECOLOGY

Assessment of 16S rRNA gene-based phylogenetic diversity and promising plant growth-promoting traits of Acinetobacter community from the rhizosphere of wheat

(2010) Dhara Sachdev et al.   MICROBIOLOGICAL RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Evolution of Domesticated Bread Wheat

(2010) Nancy A. Eckardt   PLANT CELL

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Rice Seeds as Sources of Endophytic Bacteria

(2009) Hiroko Kaga et al.   MICROBES AND ENVIRONMENTS

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY