Phenotypic and Genomic Comparison of the Two Most Common ExoU-Positive Pseudomonas aeruginosa Clones, PA14 and ST235

Co-existence of OXA-48 and NDM-1 in colistin resistant Pseudomonas aeruginosa ST235

(2020) Cansel Vatansever et al.   Emerging Microbes & Infections

Single-Nucleotide Polymorphism-Based Genetic Diversity Analysis of Clinical Pseudomonas aeruginosa Isolates

(2020) Uthayakumar Muthukumarasamy et al.   Genome Biology and Evolution

Multidrug-Resistant Bacterial Infections in U.S. Hospitalized Patients, 2012–2017

(2020) John A. Jernigan et al.   NEW ENGLAND JOURNAL OF MEDICINE

Low transmission risk of Pseudomonas aeruginosa in a bronchiectasis clinic based on the knowledge of bacterial population biology

(2019) Nina Cramer et al.   EUROPEAN RESPIRATORY JOURNAL

Genome plasticity favours double chromosomal Tn4401b-blaKPC-2 transposon insertion in the Pseudomonas aeruginosa ST235 clone

(2019) Deisy Abril et al.   BMC MICROBIOLOGY

Emerging Strategies to Combat ESKAPE Pathogens in the Era of Antimicrobial Resistance: A Review

(2019) Mansura S. Mulani et al.   Frontiers in Microbiology

Local outbreak of extended spectrum beta lactamase SHV2a producing Pseudomonas aeruginosa reveals the emergence of a new specific sub-lineage of the international ST235 high risk clone

(2019) Guilhem Royer et al.   JOURNAL OF HOSPITAL INFECTION

High-Risk International Clones of Carbapenem-Nonsusceptible Pseudomonas aeruginosa Endemic to Indonesian Intensive Care Units: Impact of a Multifaceted Infection Control Intervention Analyzed at the Genomic Level

(2019) Andreu Coello Pelegrin et al.   mBio

Pathogenic characteristics of Pseudomonas aeruginosa bacteraemia isolates in a high-endemicity setting for ST175 and ST235 high-risk clones

(2019) Raúl Recio et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Pseudomonas aeruginosa Toxin ExoU as a Therapeutic Target in the Treatment of Bacterial Infections

(2019) Daniel M. Foulkes et al.   Microorganisms

Mechanisms and Targeted Therapies for Pseudomonas aeruginosa Lung Infection

(2018) Colleen S. Curran et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Global emergence of the widespread Pseudomonas aeruginosa ST235 clone

(2018) P. Treepong et al.   CLINICAL MICROBIOLOGY AND INFECTION

Bacteraemia due to extensively drug-resistant Pseudomonas aeruginosa sequence type 235 high-risk clone: Facing the perfect storm

(2018) Raúl Recio et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Epidemiology, Biology, and Impact of Clonal Pseudomonas aeruginosa Infections in Cystic Fibrosis

(2018) Michael D. Parkins et al.   CLINICAL MICROBIOLOGY REVIEWS

Epidemiology of Pseudomonas aeruginosa in agricultural areas*

(2018) Milton N. Schroth et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Forensic investigation into the origin of Pseudomonas aeruginosa PA14 — old but not lost

(2018) Kalai Mathee   JOURNAL OF MEDICAL MICROBIOLOGY

The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity

(2018) Luca Freschi et al.   Genome Biology and Evolution

Genomic and phenotypic diversity among ten laboratory isolates of Pseudomonas aeruginosa PAO1

(2018) Courtney E. Chandler et al.   JOURNAL OF BACTERIOLOGY

The extreme C terminus of the Pseudomonas aeruginosa effector ExoY is crucial for binding to its eukaryotic activator, F-actin

(2018) Alexander Belyy et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Spread of GES-5 carbapenemase-producing Pseudomonas aeruginosa clinical isolates in Japan due to clonal expansion of ST235

(2018) Tomomi Hishinuma et al.   PLoS One

Management of multidrug-resistant Pseudomonas aeruginosa in the intensive care unit: state of the art

(2017) Alberto Enrico Maraolo et al.   Expert Review of Anti-Infective Therapy

Emergence and Spread of Epidemic Multidrug-Resistant Pseudomonas aeruginosa

(2017) Tohru Miyoshi-Akiyama et al.   Genome Biology and Evolution

Pseudomonas-aeruginosa-Infektion bei chronisch obstruktiver Lungenerkrankung

(2017) G. G. U. Rohde et al.   INTERNIST

Multidrug-Resistant Sequence Type 235 Pseudomonas aeruginosa Clinical Isolates Producing IMP-26 with Increased Carbapenem-Hydrolyzing Activities in Vietnam

(2016) Tatsuya Tada et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

(2016) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Intraclonal genome diversity of the major Pseudomonas aeruginosa clones C and PA14

(2016) Sebastian Fischer et al.   Environmental Microbiology Reports

Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates ofPseudomonas aeruginosa

(2016) Piklu Roy Chowdhury et al.   Open Biology

The increasing threat of Pseudomonas aeruginosa high-risk clones

(2015) Antonio Oliver et al.   DRUG RESISTANCE UPDATES

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Habitat-associated skew of clone abundance in thePseudomonas aeruginosapopulation

(2015) Lutz Wiehlmann et al.   Environmental Microbiology Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Interclonal gradient of virulence in thePseudomonas aeruginosapangenome from disease and environment

(2014) Rolf Hilker et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of a new genetic environment associated with GES-6 carbapenemase from a Pseudomonas aeruginosa isolate belonging to the high-risk clone ST235

(2014) J. Botelho et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Establishment and multi drug resistance evolution of ST235 Pseudomonas aeruginosa strains in the intensive care unit of a Colombian hospital

(2014) Elena Martinez et al.   RESEARCH IN MICROBIOLOGY

Dissemination of metallo- -lactamase-producing Pseudomonas aeruginosa of sequence type 235 in Asian countries

(2013) M. J. Kim et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Spread of extensively resistant VIM-2-positive ST235 Pseudomonas aeruginosa in Belarus, Kazakhstan, and Russia: a longitudinal epidemiological and clinical study

(2013) Mikhail V Edelstein et al.   LANCET INFECTIOUS DISEASES

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Azithromycin to prevent Pseudomonas aeruginosa ventilator-associated pneumonia by inhibition of quorum sensing: a randomized controlled trial

(2012) Christian van Delden et al.   INTENSIVE CARE MEDICINE

Molecular Epidemiology of Chronic Pseudomonas aeruginosa Airway Infections in Cystic Fibrosis

(2012) Nina Cramer et al.   PLoS One

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs

(2011) Nina Cramer et al.   ENVIRONMENTAL MICROBIOLOGY

Effective prevention of Pseudomonas aeruginosa cross-infection at a cystic fibrosis centre – Results of a 10-year prospective study

(2011) Lutz Wiehlmann et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Complete Genome Sequence of Highly Multidrug-Resistant Pseudomonas aeruginosa NCGM2.S1, a Representative Strain of a Cluster Endemic to Japan

(2011) T. Miyoshi-Akiyama et al.   JOURNAL OF BACTERIOLOGY

Genetic Characterization Indicates that a Specific Subpopulation of Pseudomonas aeruginosa Is Associated with Keratitis Infections

(2011) R. M. K. Stewart et al.   JOURNAL OF CLINICAL MICROBIOLOGY

In-Vivo Expression Profiling of Pseudomonas aeruginosa Infections Reveals Niche-Specific and Strain-Independent Transcriptional Programs

(2011) Piotr Bielecki et al.   PLoS One

Pseudomonas aeruginosa Genomic Structure and Diversity

(2011) Jens Klockgether et al.   Frontiers in Microbiology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Pseudomonas aeruginosaPopulation Biology in Chronic Obstructive Pulmonary Disease

(2009) Elza Rakhimova et al.   JOURNAL OF INFECTIOUS DISEASES

The type III secretion system of Pseudomonas aeruginosa: infection by injection

(2009) Alan R. Hauser   NATURE REVIEWS MICROBIOLOGY