Single-Nucleotide Polymorphism-Based Genetic Diversity Analysis of Clinical Pseudomonas aeruginosa Isolates
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Title
Single-Nucleotide Polymorphism-Based Genetic Diversity Analysis of Clinical Pseudomonas aeruginosa Isolates
Authors
Keywords
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Journal
Genome Biology and Evolution
Volume 12, Issue 4, Pages 396-406
Publisher
Oxford University Press (OUP)
Online
2020-03-20
DOI
10.1093/gbe/evaa059
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Note: Only part of the references are listed.- Within-Host Adaptation Mediated by Intergenic Evolution in Pseudomonas aeruginosa
- (2019) S M Hossein Khademi et al. Genome Biology and Evolution
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- (2018) NUCLEIC ACIDS RESEARCH
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- GenBank
- (2017) Dennis A Benson et al. NUCLEIC ACIDS RESEARCH
- Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species
- (2016) Jeanneth Mosquera-Rendón et al. BMC GENOMICS
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Karect: accurate correction of substitution, insertion and deletion errors for next-generation sequencing data
- (2015) Amin Allam et al. BIOINFORMATICS
- The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation
- (2015) Andreas Dötsch et al. mBio
- Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium
- (2015) Luca Freschi et al. Frontiers in Microbiology
- What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated
- (2015) Benoît Valot et al. PLoS One
- A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
- (2014) David Coil et al. BIOINFORMATICS
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Interclonal gradient of virulence in thePseudomonas aeruginosapangenome from disease and environment
- (2014) Rolf Hilker et al. ENVIRONMENTAL MICROBIOLOGY
- The extensive set of accessoryPseudomonas aeruginosagenomic components
- (2014) Sarah Pohl et al. FEMS MICROBIOLOGY LETTERS
- Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis
- (2014) Rasmus Lykke Marvig et al. NATURE GENETICS
- Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica
- (2014) Pimlapas Leekitcharoenphon et al. PLoS One
- SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
- (2014) Michael Inouye et al. Genome Medicine
- MLST revisited: the gene-by-gene approach to bacterial genomics
- (2013) Martin C. J. Maiden et al. NATURE REVIEWS MICROBIOLOGY
- Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective
- (2012) Anders Folkesson et al. NATURE REVIEWS MICROBIOLOGY
- BIGSdb: Scalable analysis of bacterial genome variation at the population level
- (2011) Keith A Jolley et al. BMC BIOINFORMATICS
- Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs
- (2011) Nina Cramer et al. ENVIRONMENTAL MICROBIOLOGY
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- (2011) F. Sievers et al. Molecular Systems Biology
- Evolutionary dynamics of bacteria in a human host environment
- (2011) L. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pseudomonas aeruginosa Genomic Structure and Diversity
- (2011) Jens Klockgether et al. Frontiers in Microbiology
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa
- (2010) Andreas Dotsch et al. BMC GENOMICS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Pseudomonas aeruginosaMicroevolution during Cystic Fibrosis Lung Infection Establishes Clones with Adapted Virulence
- (2009) Alessandra Bragonzi et al. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE
- Dynamics of Pseudomonas aeruginosa genome evolution
- (2008) K. Mathee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Population Genetics of dN/dS
- (2008) Sergey Kryazhimskiy et al. PLoS Genetics
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