S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling

BMAL1 Associates with NOP58 in the Nucleolus and Contributes to Pre-rRNA Processing

(2020) Marlene Cervantes et al.   iScience

Chromatin capture links the metabolic enzyme AHCY to stem cell proliferation

(2019) Sergi Aranda et al.   Science Advances

Multicomponent Analysis of Phasor Plot in a Single Pixel to Calculate Changes of Metabolic Trajectory in Biological Systems

(2019) Suman Ranjit et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Metabolic regulation of chromatin modifications and gene expression

(2018) Juan Manuel Schvartzman et al.   JOURNAL OF CELL BIOLOGY

S -adenosylhomocysteine Hydrolase Participates in DNA Methylation Inheritance

(2018) V.K. Chaithanya Ponnaluri et al.   JOURNAL OF MOLECULAR BIOLOGY

Regulation of chromatin and gene expression by metabolic enzymes and metabolites

(2018) Xinjian Li et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

CircadiOmics: circadian omic web portal

(2018) Nicholas Ceglia et al.   NUCLEIC ACIDS RESEARCH

TwoCk1δtranscripts regulated by m6A methylation code for two antagonistic kinases in the control of the circadian clock

(2018) Jean-Michel Fustin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A proteomics landscape of circadian clock in mouse liver

(2018) Yunzhi Wang et al.   Nature Communications

Methionine metabolism influences genomic architecture and gene expression through H3K4me3 peak width

(2018) Ziwei Dai et al.   Nature Communications

Metabolic Signaling to the Nucleus in Cancer

(2018) Sydney L. Campbell et al.   MOLECULAR CELL

Fit-free analysis of fluorescence lifetime imaging data using the phasor approach

(2018) Suman Ranjit et al.   Nature Protocols

Knock-down of AHCY and depletion of adenosine induces DNA damage and cell cycle arrest

(2018) Lucija Belužić et al.   Scientific Reports

Circadian blueprint of metabolic pathways in the brain

(2018) Carolina Magdalen Greco et al.   NATURE REVIEWS NEUROSCIENCE

Mutations in S-adenosylhomocysteine hydrolase (AHCY) affect its nucleocytoplasmic distribution and capability to interact with S-adenosylhomocysteine hydrolase-like 1 protein

(2017) Ivana Grbeša et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

KAT2A coupled with the α-KGDH complex acts as a histone H3 succinyltransferase

(2017) Yugang Wang et al.   NATURE

Acetyl-CoA synthetase regulates histone acetylation and hippocampal memory

(2017) Philipp Mews et al.   NATURE

The impact of cellular metabolism on chromatin dynamics and epigenetics

(2017) Michael A. Reid et al.   NATURE CELL BIOLOGY

What time is it? Deep learning approaches for circadian rhythms

(2016) Forest Agostinelli et al.   BIOINFORMATICS

Tissue-specific down-regulation of S-adenosyl-homocysteine via suppression of dAhcyL1/dAhcyL2 extends health span and life span inDrosophila

(2016) Andrey A. Parkhitko et al.   GENES & DEVELOPMENT

TFEB at a glance

(2016) Gennaro Napolitano et al.   JOURNAL OF CELL SCIENCE

High-throughput discovery of novel developmental phenotypes

(2016) Mary E. Dickinson et al.   NATURE

Genetic and epigenomic mechanisms of mammalian circadian transcription

(2016) Romeo Papazyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Metabolic Enzymes Moonlighting in the Nucleus: Metabolic Regulation of Gene Transcription

(2016) Aristeidis E. Boukouris et al.   TRENDS IN BIOCHEMICAL SCIENCES

Genetic and epigenomic mechanisms of mammalian circadian transcription

(2016) Romeo Papazyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Circadian Protein BMAL1 Regulates Translation in Response to S6K1-Mediated Phosphorylation

(2015) Jonathan O. Lipton et al.   CELL

Histone Methylation Dynamics and Gene Regulation Occur through the Sensing of One-Carbon Metabolism

(2015) Samantha J. Mentch et al.   Cell Metabolism

NAD+-SIRT1 control of H3K4 trimethylation through circadian deacetylation of MLL1

(2015) Lorena Aguilar-Arnal et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

NAD+-SIRT1 control of H3K4 trimethylation through circadian deacetylation of MLL1

(2015) Lorena Aguilar-Arnal et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Overexpression of S-adenosylhomocysteine hydrolase (SAHH) in esophageal squamous cell carcinoma (ESCC) cell lines: effects on apoptosis, migration and adhesion of cells

(2014) Qinghua Li et al.   MOLECULAR BIOLOGY REPORTS

Specificity in Circadian Clock Feedback from Targeted Reconstitution of the NuRD Corepressor

(2014) Jin Young Kim et al.   MOLECULAR CELL

Chromatin landscape and circadian dynamics: Spatial and temporal organization of clock transcription

(2014) Lorena Aguilar-Arnal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SIRT1 Mediates Central Circadian Control in the SCN by a Mechanism that Decays with Aging

(2013) Hung-Chun Chang et al.   CELL

RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock

(2013) Jean-Michel Fustin et al.   CELL

Structure of the p300 catalytic core and implications for chromatin targeting and HAT regulation

(2013) Manuela Delvecchio et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Histone methyltransferase MLL3 contributes to genome-scale circadian transcription

(2013) Utham K. Valekunja et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mice Genetically Deficient in Vasopressin V1a and V1b Receptors Are Resistant to Jet Lag

(2013) Yoshiaki Yamaguchi et al.   SCIENCE

Molecular architecture of the mammalian circadian clock

(2013) Carrie L. Partch et al.   TRENDS IN CELL BIOLOGY

Connecting Threads: Epigenetics and Metabolism

(2012) Sayako Katada et al.   CELL

Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome

(2012) Christopher Vollmers et al.   Cell Metabolism

Metabolic Regulation of Epigenetics

(2012) Chao Lu et al.   Cell Metabolism

Circadian topology of metabolism

(2012) Joseph Bass   NATURE

Cyber-T web server: differential analysis of high-throughput data

(2012) M. A. Kayala et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Crystal Structure of the Heterodimeric CLOCK:BMAL1 Transcriptional Activator Complex

(2012) N. Huang et al.   SCIENCE

MotifMap: integrative genome-wide maps of regulatory motif sites for model species

(2011) Kenneth Daily et al.   BMC BIOINFORMATICS

Chemogenetic Analysis of Human Protein Methyltransferases

(2011) Victoria M. Richon et al.   Chemical Biology & Drug Design

Methionine Adenosyltransferase II Serves as a Transcriptional Corepressor of Maf Oncoprotein

(2011) Yasutake Katoh et al.   MOLECULAR CELL

Nuclear Targeting of Methyl-Recycling Enzymes in Arabidopsis thaliana Is Mediated by Specific Protein Interactions

(2011) Sanghyun Lee et al.   Molecular Plant

Histone Lysine Demethylase JARID1a Activates CLOCK-BMAL1 and Influences the Circadian Clock

(2011) L. DiTacchio et al.   SCIENCE

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

(2010) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

The histone methyltransferase MLL1 permits the oscillation of circadian gene expression

(2010) Sayako Katada et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The IRBIT domain adds new functions to the AHCY family

(2008) Benoit Devogelaere et al.   BIOESSAYS

The NAD+-Dependent Deacetylase SIRT1 Modulates CLOCK-Mediated Chromatin Remodeling and Circadian Control

(2008) Yasukazu Nakahata et al.   CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY