New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal
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Title
New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal
Authors
Keywords
-
Journal
Microbiome
Volume 8, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-11-20
DOI
10.1186/s40168-020-00936-4
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- (2015) M. N. Shimaraev et al. DOKLADY EARTH SCIENCES
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