Metagenomic Analysis of Virioplankton from the Pelagic Zone of Lake Baikal

Recent changes in the spring microplankton of Lake Baikal, Russia

(2019) N.A. Bondarenko et al.   LIMNOLOGICA

Geospatial distribution of viromes in tropical freshwater ecosystems

(2018) Xiaoqiong Gu et al.   WATER RESEARCH

Viral Diversity and Its Relationship With Environmental Factors at the Surface and Deep Sea of Prydz Bay, Antarctica

(2018) Zheng Gong et al.   Frontiers in Microbiology

Temporal dynamics of uncultured viruses: a new dimension in viral diversity

(2017) Ksenia Arkhipova et al.   ISME Journal

Diversity and Distribution Characteristics of Viruses in Soils of a Marine-Terrestrial Ecotone in East China

(2017) Dan-Ting Yu et al.   MICROBIAL ECOLOGY

Current chemical composition of Lake Baikal water

(2017) Tamara V. Khodzher et al.   Inland Waters

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon

(2017) Bruno S. de O. Silva et al.   mSphere

Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges

(2016) Katherine Bruder et al.   Evolutionary Bioinformatics

Assessment of a metaviromic dataset generated from nearshore Lake Michigan

(2016) Siobhan C. Watkins et al.   MARINE AND FRESHWATER RESEARCH

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

(2016) Simon Roux et al.   PeerJ

Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland

(2016) Timofey Skvortsov et al.   PLoS One

Metagenomic assessment of viral diversity in Lake Matoaka, a temperate, eutrophic freshwater lake in southeastern Virginia, USA

(2015) JC Green et al.   AQUATIC MICROBIAL ECOLOGY

Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis

(2015) Mohammad Mohiuddin et al.   Frontiers in Microbiology

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Biodiversity and distribution of polar freshwater DNA viruses

(2015) D. Aguirre de Carcer et al.   Science Advances

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Characterization of RNA Viruses in Tropical Seawater Using Targeted PCR and Metagenomics

(2014) A. I. Culley et al.   mBio

Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances

(2013) Ching-Hung Tseng et al.   ISME Journal

Viral metagenomics analysis of planktonic viruses in East Lake, Wuhan, China

(2013) Xingyi Ge et al.   VIROLOGICA SINICA

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

(2012) Laura Fancello et al.   ISME Journal

Are we missing half of the viruses in the ocean?

(2012) Grieg F Steward et al.   ISME Journal

Going viral: next-generation sequencing applied to phage populations in the human gut

(2012) Alejandro Reyes et al.   NATURE REVIEWS MICROBIOLOGY

Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics

(2012) Simon Roux et al.   PLoS One

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

(2011) Kyoung-Ho Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Metagenomic Analysis of 0.2-μm-Passable Microorganisms in Deep-Sea Hydrothermal Fluid

(2011) Ryosuke Nakai et al.   MARINE BIOTECHNOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Molecular-genetic identification of T4 bacteriophages in Lake Baikal

(2010) T. V. Butina et al.   Doklady Biochemistry and Biophysics

Phylogenetic diversity of T4-like bacteriophages in Lake Baikal, East Siberia

(2010) Tatyana Vladimirovna Butina et al.   FEMS MICROBIOLOGY LETTERS

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Long-term and recent changes in southern Lake Michigan water quality with implications for present trophic status

(2010) Julia L. Mida et al.   JOURNAL OF GREAT LAKES RESEARCH

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

A simple and efficient method for concentration of ocean viruses by chemical flocculation

(2010) Seth G. John et al.   Environmental Microbiology Reports

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Laboratory procedures to generate viral metagenomes

(2009) Rebecca V Thurber et al.   Nature Protocols

Metagenomic Analysis of RNA Viruses in a Fresh Water Lake

(2009) Appolinaire Djikeng et al.   PLoS One

High Diversity of the Viral Community from an Antarctic Lake

(2009) A. Lopez-Bueno et al.   SCIENCE

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE