Niche Differentiation of Comammox Nitrospira in the Mudflat and Reclaimed Agricultural Soils Along the North Branch of Yangtze River Estuary

Diversity and abundance of comammox bacteria in the sediments of an urban lake

(2020) Y. Xu et al.   JOURNAL OF APPLIED MICROBIOLOGY

Biogeographic distribution of comammox bacteria in diverse terrestrial habitats

(2020) Yao Shi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers

(2020) Shufeng Liu et al.   ISME Journal

Evaluation of Two Primer Sets for Amplification of Comammox Nitrospira amoA Genes in Wetland Soils

(2020) Chenshuo Lin et al.   Frontiers in Microbiology

Distribution and Diversity of Comammox Nitrospira in Coastal Wetlands of China

(2020) Dongyao Sun et al.   Frontiers in Microbiology

Comammox Nitrospira are the dominant ammonia oxidizers in a mainstream low dissolved oxygen nitrification reactor

(2019) Paul Roots et al.   WATER RESEARCH

Distribution of comammox and canonical ammonia oxidizing bacteria in tidal flat sediments of the Yangtze River estuary at different depths over four seasons

(2019) Q. Jiang et al.   JOURNAL OF APPLIED MICROBIOLOGY

Adaptive responses of comammox Nitrospira and canonical ammonia oxidizers to long-term fertilizations: Implications for the relative contributions of different ammonia oxidizers to soil nitrogen cycling

(2019) Jichen Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comammox Nitrospira clade B contributes to nitrification in soil

(2019) Zhihui Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Abundance and community composition of comammox bacteria in different ecosystems by a universal primer set

(2019) Zhirong Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comammox Nitrospira play an active role in nitrification of agricultural soils amended with nitrogen fertilizers

(2019) Chaoyu Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ubiquity, diversity, and activity of comammox Nitrospira in agricultural soils

(2019) Shaoyi Xu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Complete ammonia oxidation: an important control on nitrification in engineered ecosystems?

(2018) Christopher E Lawson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater-fed rapid sand filter communities

(2018) Susan Jane Fowler et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

(2018) Alejandro Palomo et al.   ISME Journal

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Comammox Functionality Identified in Diverse Engineered Biological Wastewater Treatment Systems

(2018) Medini K. Annavajhala et al.   Environmental Science & Technology Letters

Evidence for complete nitrification in enrichment culture of tidal sediments and diversity analysis of clade a comammox Nitrospira in natural environments

(2018) Chendi Yu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants

(2018) Mingyuan Wang et al.   BIORESOURCE TECHNOLOGY

Genetic correlation network prediction of forest soil microbial functional organization

(2018) Bin Ma et al.   ISME Journal

Niche separation of comammox Nitrospira and canonical ammonia oxidizers in an acidic subtropical forest soil under long-term nitrogen deposition

(2018) Xiuzhen Shi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox)

(2018) Fei Xia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Niche Separation of Ammonia Oxidizers in Mudflat and Agricultural Soils Along the Yangtze River, China

(2018) Xue Zhou et al.   Frontiers in Microbiology

Comammox—a newly discovered nitrification process in the terrestrial nitrogen cycle

(2017) Hang-Wei Hu et al.   JOURNAL OF SOILS AND SEDIMENTS

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

(2017) K. Dimitri Kits et al.   NATURE

Comammox in drinking water systems

(2017) Yulin Wang et al.   WATER RESEARCH

Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira

(2017) Ryan P. Bartelme et al.   Frontiers in Microbiology

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

(2017) Petra Pjevac et al.   Frontiers in Microbiology

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.

(2016) Alejandro Palomo et al.   ISME Journal

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Metagenomic Evidence for the Presence of Comammox Nitrospira -Like Bacteria in a Drinking Water System

(2015) Ameet J. Pinto et al.   mSphere

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Active Ammonia Oxidizers in an Acidic Soil Are Phylogenetically Closely Related to Neutrophilic Archaeon

(2013) Baozhan Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Community Dynamics and Activity of Ammonia-Oxidizing Prokaryotes in Intertidal Sediments of the Yangtze Estuary

(2013) Yanling Zheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial Distribution and Factors Shaping the Niche Segregation of Ammonia-Oxidizing Microorganisms in the Qiantang River, China

(2013) Shuai Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Spatial Variability in Nitrification Rates and Ammonia-Oxidizing Microbial Communities in the Agriculturally Impacted Elkhorn Slough Estuary, California

(2010) Scott D. Wankel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Mudflat development in Jiangsu Province, China: Practices and experiences

(2010) Fang Wang et al.   OCEAN & COASTAL MANAGEMENT

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE