Soil Bacterial and Archaeal Communities and Their Potential to Perform N-Cycling Processes in Soils of Boreal Forests Growing on Well-Drained Peat

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

Rapid Transfer of Plant Photosynthates to Soil Bacteria via Ectomycorrhizal Hyphae and Its Interaction With Nitrogen Availability

(2019) Stefan Gorka et al.   Frontiers in Microbiology

Comammox Nitrospira clade B contributes to nitrification in soil

(2019) Zhihui Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-Term N Fertilization Decreased Diversity and Altered the Composition of Soil Bacterial and Archaeal Communities

(2019) Renpeng Sun et al.   Agronomy-Basel

Soil bacterial and fungal diversity and compositions respond differently to forest development

(2019) Chengjie Ren et al.   CATENA

Land use change from upland to paddy field in Mollisols drives soil aggregation and associated microbial communities

(2019) Xin Li et al.   APPLIED SOIL ECOLOGY

Decomposing litter; limit values; humus accumulation, locally and regionally

(2018) Björn Berg   APPLIED SOIL ECOLOGY

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere

(2018) Manuel Delgado-Baquerizo et al.   ECOLOGY

Factors controlling nitrous oxide emissions from managed northern peat soils with low carbon to nitrogen ratio

(2018) Maarit Liimatainen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

(2018) Ricardo J. Eloy Alves et al.   Nature Communications

Differences in microbial community structure and nitrogen cycling in natural and drained tropical peatland soils

(2018) Mikk Espenberg et al.   Scientific Reports

Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants

(2018) Mingyuan Wang et al.   BIORESOURCE TECHNOLOGY

Complete nitrification: insights into the ecophysiology of comammox Nitrospira

(2018) Hanna Koch et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Impacts of drainage, restoration and warming on boreal wetland greenhouse gas fluxes

(2018) A.M. Laine et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Ecosystems carbon budgets of differently aged downy birch stands growing on well-drained peatlands

(2017) Veiko Uri et al.   FOREST ECOLOGY AND MANAGEMENT

Comparison of Archaeal Communities in Mineral Soils at a Boreal Forest in Finland and a Cold-Temperate Forest in Japan

(2017) Reika Isoda et al.   MICROBES AND ENVIRONMENTS

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

(2017) K. Dimitri Kits et al.   NATURE

Adaptive root foraging strategies along a boreal-temperate forest gradient

(2017) Ivika Ostonen et al.   NEW PHYTOLOGIST

Spatial and temporal dynamics of nitrogen fixing, nitrifying and denitrifying microbes in an unfertilized grassland soil

(2017) Kathleen Regan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Abundant iron and sulfur oxidizers in the stratified sediment of a eutrophic freshwater reservoir with annual cyanobacterial blooms

(2017) Long Jin et al.   Scientific Reports

Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand

(2017) Marika Truu et al.   Frontiers in Microbiology

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

(2017) Petra Pjevac et al.   Frontiers in Microbiology

Long-term effects of imbalanced fertilization on the composition and diversity of soil bacterial community

(2016) Jinu Eo et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

The nitrogen cycle

(2016) Lisa Y. Stein et al.   CURRENT BIOLOGY

Maize Cytolines Unmask Key Nuclear Genes That Are under the Control of Retrograde Signaling Pathways in Plants

(2016) Mihai Miclaus et al.   Genome Biology and Evolution

Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae

(2016) Bärbel U. Foesel et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate availability drives spatial patterns in richness of ammonia-oxidizing bacteria and archaea in temperate forest soils

(2016) J.S. Norman et al.   SOIL BIOLOGY & BIOCHEMISTRY

The genetic potential of N2 emission via denitrification and ANAMMOX from the soils and sediments of a created riverine treatment wetland complex

(2015) Teele Ligi et al.   ECOLOGICAL ENGINEERING

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

Microbial denitrification dominates nitrate losses from forest ecosystems

(2015) Yunting Fang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

N2O production, a widespread trait in fungi

(2015) Koki Maeda et al.   Scientific Reports

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Climate response of the soil nitrogen cycle in three forest types of a headwater Mediterranean catchment

(2015) Anna Lupon et al.   Journal of Geophysical Research-Biogeosciences

Refined NrfA Phylogeny Improves PCR-BasednrfAGene Detection

(2014) Allana Welsh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The nitrate-ammonifying andnosZ-carrying bacteriumBacillus viretiis a potent source and sink for nitric and nitrous oxide under high nitrate conditions

(2014) Daniel Mania et al.   ENVIRONMENTAL MICROBIOLOGY

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

(2014) Fabiana S. Paula et al.   MOLECULAR ECOLOGY

Soil denitrification fluxes from three northeastern North American forests across a range of nitrogen deposition

(2014) Jennifer L. Morse et al.   OECOLOGIA

Intergenomic Comparisons Highlight Modularity of the Denitrification Pathway and Underpin the Importance of Community Structure for N2O Emissions

(2014) Daniel R. H. Graf et al.   PLoS One

Bacterial diversity and community structure along different peat soils in boreal forest

(2013) Hui Sun et al.   APPLIED SOIL ECOLOGY

Effects of soil chemical characteristics and water regime on denitrification genes (nirS, nirK, and nosZ) abundances in a created riverine wetland complex

(2013) Teele Ligi et al.   ECOLOGICAL ENGINEERING

Humus characteristics and seasonal changes of soil arthropod communities in a natural sessile oak (Quercus petraea L.) stand and adjacent Austrian pine (Pinus nigra Arnold) plantation

(2013) Meric Cakir et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Candidatus Methanogranum caenicola: a Novel Methanogen from the Anaerobic Digested Sludge, and Proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a Methanogenic Lineage of the Class Thermoplasmata

(2013) Takao Iino et al.   MICROBES AND ENVIRONMENTS

Edge Principal Components and Squash Clustering: Using the Special Structure of Phylogenetic Placement Data for Sample Comparison

(2013) Frederick A. Matsen IV et al.   PLoS One

Hydrologic history influences microbial community composition and nitrogen cycling under experimental drying/wetting treatments

(2013) Ariane L. Peralta et al.   SOIL BIOLOGY & BIOCHEMISTRY

Abundance-weighted phylogenetic diversity measures distinguish microbial community states and are robust to sampling depth

(2013) Connor O. McCoy et al.   PeerJ

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes

(2012) Patricia C Dos Santos et al.   BMC GENOMICS

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

(2012) R. A. Sanford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Functional Ecology of Free-Living Nitrogen Fixation: A Contemporary Perspective

(2011) Sasha C. Reed et al.   Annual Review of Ecology Evolution and Systematics

Fine root foraging strategies in Norway spruce forests across a European climate gradient

(2011) Ivika Ostonen et al.   GLOBAL CHANGE BIOLOGY

Release LTPs104 of the All-Species Living Tree

(2011) Raúl Munoz et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Soil organic matter quality as a link between microbial community structure and vegetation composition along a successional gradient in a boreal forest

(2010) Päivi Merilä et al.   APPLIED SOIL ECOLOGY

Factors causing variation in fine root biomass in forest ecosystems

(2010) Leena Finér et al.   FOREST ECOLOGY AND MANAGEMENT

The impact of the canopy structure on the spatial variability in forest floor carbon stocks

(2010) Carolin Penne et al.   GEODERMA

Response of soil microbial communities and the production of plant-available nitrogen to a two-year rainfall manipulation in the New Jersey Pinelands

(2010) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mapping field-scale spatial patterns of size and activity of the denitrifier community

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment

(2009) Sara Hallin et al.   ISME Journal

Ectomycorrhizal root tips in relation to site and stand characteristics in Norway spruce and Scots pine stands in boreal forests

(2009) H.-S. Helmisaari et al.   TREE PHYSIOLOGY

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment

(2008) James I. Prosser et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic Analysis of Nitrite, Nitric Oxide, and Nitrous Oxide Respiratory Enzymes Reveal a Complex Evolutionary History for Denitrification

(2008) Christopher M. Jones et al.   MOLECULAR BIOLOGY AND EVOLUTION