Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons

Cell-Surface Proteomic Profiling in the Fly Brain Uncovers Wiring Regulators

(2020) Jiefu Li et al.   CELL

Single-Cell Transcriptomes Reveal Diverse Regulatory Strategies for Olfactory Receptor Expression and Axon Targeting

(2020) Hongjie Li et al.   CURRENT BIOLOGY

Presynaptic developmental plasticity allows robust sparse wiring of the Drosophila mushroom body

(2020) Najia A Elkahlah et al.   eLife

Synaptic Specificity, Recognition Molecules, and Assembly of Neural Circuits

(2020) Joshua R. Sanes et al.   CELL

Complete Connectomic Reconstruction of Olfactory Projection Neurons in the Fly Brain

(2020) Alexander S. Bates et al.   CURRENT BIOLOGY

MARS: discovering novel cell types across heterogeneous single-cell experiments

(2020) Maria Brbić et al.   NATURE METHODS

Single‐cell RNA sequencing in Drosophila : Technologies and applications

(2020) Hongjie Li   Wiley Interdisciplinary Reviews-Developmental Biology

Transcriptional Programs of Circuit Assembly in the Drosophila Visual System

(2020) Yerbol Z. Kurmangaliyev et al.   NEURON

Chemoconnectomics: Mapping Chemical Transmission in Drosophila

(2019) Bowen Deng et al.   NEURON

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Efficient integration of heterogeneous single-cell transcriptomes using Scanorama

(2019) Brian Hie et al.   NATURE BIOTECHNOLOGY

Transsynaptic Fish-lips signaling prevents misconnections between nonsynaptic partner olfactory neurons

(2019) Qijing Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BBKNN: fast batch alignment of single cell transcriptomes

(2019) Krzysztof Polański et al.   BIOINFORMATICS

Fast, sensitive and accurate integration of single-cell data with Harmony

(2019) Ilya Korsunsky et al.   NATURE METHODS

Single cell transcriptomics in neuroscience: cell classification and beyond

(2018) Bosiljka Tasic   CURRENT OPINION IN NEUROBIOLOGY

Genetic Reagents for Making Split-GAL4 Lines inDrosophila

(2018) Heather Dionne et al.   GENETICS

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

(2018) Suijuan Zhong et al.   NATURE

Linking neuronal lineage and wiring specificity

(2018) Hongjie Li et al.   Neural Development

The Organization of Projections from Olfactory Glomeruli onto Higher-Order Neurons

(2018) James M. Jeanne et al.   NEURON

Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement

(2018) Brian T. Kalish et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Continuous Variation within Cell Types of the Nervous System

(2018) Mark S. Cembrowski et al.   TRENDS IN NEUROSCIENCES

A gene-specific T2A-GAL4 library for Drosophila

(2018) Pei-Tseng Lee et al.   eLife

Genetic Reagents for Making Split-GAL4 Lines inDrosophila

(2018) Heather Dionne et al.   GENETICS

Combining Developmental and Perturbation-Seq Uncovers Transcriptional Modules Orchestrating Neuronal Remodeling

(2018) Idan Alyagor et al.   DEVELOPMENTAL CELL

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins

(2018) Filip Cosmanescu et al.   NEURON

Neuronal specification in space and time

(2018) Isabel Holguera et al.   SCIENCE

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Origins of Cell-Type-Specific Olfactory Processing in the Drosophila Mushroom Body Circuit

(2017) Kengo Inada et al.   NEURON

Control of Synaptic Connectivity by a Network of Drosophila IgSF Cell Surface Proteins

(2015) Robert A. Carrillo et al.   CELL

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

(2015) Jacob H. Levine et al.   CELL

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Opposing intrinsic temporal gradients guide neural stem cell production of varied neuronal fates

(2015) Z. Liu et al.   SCIENCE

Plug-and-Play Genetic Access to Drosophila Cell Types using Exchangeable Exon Cassettes

(2015) Fengqiu Diao et al.   Cell Reports

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Genetic Control of Wiring Specificity in the Fly Olfactory System

(2014) Weizhe Hong et al.   GENETICS

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Early Olfactory Processing in Drosophila: Mechanisms and Principles

(2013) Rachel I. Wilson   Annual Review of Neuroscience

CRISPR/Cas9-mediated genome engineering and the promise of designer flies on demand

(2013) Scott J Gratz et al.   FLY

Temporal fate specification and neural progenitor competence during development

(2013) Minoree Kohwi et al.   NATURE REVIEWS NEUROSCIENCE

GABAergic Projection Neurons Route Selective Olfactory Inputs to Specific Higher-Order Neurons

(2013) Liang Liang et al.   NEURON

Odor Discrimination in Drosophila: From Neural Population Codes to Behavior

(2013) Moshe Parnas et al.   NEURON

A Cullin1-Based SCF E3 Ubiquitin Ligase Targets the InR/PI3K/TOR Pathway to Regulate Neuronal Pruning

(2013) Jack Jing Lin Wong et al.   PLOS BIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Dye fills reveal additional olfactory tracts in the protocerebrum of wild-typeDrosophila

(2012) Nobuaki K. Tanaka et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Teneurins instruct synaptic partner matching in an olfactory map

(2012) Weizhe Hong et al.   NATURE

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

Lineage Analysis of Drosophila Lateral Antennal Lobe Neurons Reveals Notch-Dependent Binary Temporal Fate Decisions

(2012) Suewei Lin et al.   PLOS BIOLOGY

Intrinsic Epigenetic Factors Cooperate with the Steroid Hormone Ecdysone to Govern Dendrite Pruning in Drosophila

(2011) Daniel Kirilly et al.   NEURON

Stochastic Mechanisms of Cell Fate Specification that Yield Random or Robust Outcomes

(2010) Robert J. Johnston et al.   Annual Review of Cell and Developmental Biology

The Q System: A Repressible Binary System for Transgene Expression, Lineage Tracing, and Mosaic Analysis

(2010) Christopher J. Potter et al.   CELL

Branching out: mechanisms of dendritic arborization

(2010) Yuh-Nung Jan et al.   NATURE REVIEWS NEUROSCIENCE

Mechanisms and Molecules of Neuronal Wiring: A Primer

(2010) A. L. Kolodkin et al.   Cold Spring Harbor Perspectives in Biology

A Complete Developmental Sequence of a Drosophila Neuronal Lineage as Revealed by Twin-Spot MARCM

(2010) Hung-Hsiang Yu et al.   PLOS BIOLOGY

Many Paths to Synaptic Specificity

(2009) Joshua R. Sanes et al.   Annual Review of Cell and Developmental Biology

Leucine-rich repeat transmembrane proteins instruct discrete dendrite targeting in an olfactory map

(2009) Weizhe Hong et al.   NATURE NEUROSCIENCE

A genetic pathway composed of Sox14 and Mical governs severing of dendrites during pruning

(2009) Daniel Kirilly et al.   NATURE NEUROSCIENCE

FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database

(2009) Ulrike Pfreundt et al.   NUCLEIC ACIDS RESEARCH

Clonal analysis of Drosophila antennal lobe neurons: diverse neuronal architectures in the lateral neuroblast lineage

(2008) S.-L. Lai et al.   DEVELOPMENT

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

A Screen of Cell-Surface Molecules Identifies Leucine-Rich Repeat Proteins as Key Mediators of Synaptic Target Selection

(2008) Mitsuhiko Kurusu et al.   NEURON