Adaptive evolution of an essential telomere protein restricts telomeric retrotransposons

The Telomere Paradox: Stable Genome Preservation with Rapidly Evolving Proteins

(2020) Bastien Saint-Leandre et al.   TRENDS IN GENETICS

Silence at the End: How Drosophila Regulates Expression and Transposition of Telomeric Retroelements

(2020) Stefano Cacchione et al.   JOURNAL OF MOLECULAR BIOLOGY

Diversification and collapse of a telomere elongation mechanism

(2019) Bastien Saint-Leandre et al.   GENOME RESEARCH

Islands of retroelements are major components of Drosophila centromeres

(2019) Ching-Ho Chang et al.   PLOS BIOLOGY

A Heterochromatin-Specific RNA Export Pathway Facilitates piRNA Production

(2019) Mostafa F. ElMaghraby et al.   CELL

Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits

(2019) Mahul Chakraborty et al.   Nature Communications

Su(var)2-10 and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin Silencing

(2019) Maria Ninova et al.   MOLECULAR CELL

Kinetochore Function from the Bottom Up

(2018) Stephen M. Hinshaw et al.   TRENDS IN CELL BIOLOGY

Key role of piRNAs in telomeric chromatin maintenance and telomere nuclear positioning in Drosophila germline

(2018) Elizaveta Radion et al.   Epigenetics & Chromatin

Heterochromatin protein 1a functions for piRNA biogenesis predominantly from pericentric and telomeric regions in Drosophila

(2018) Ryan Yee Wei Teo et al.   Nature Communications

Control of yeast retrotransposons mediated through nucleoporin evolution

(2018) Paul A. Rowley et al.   PLoS Genetics

Shelterin-Mediated Telomere Protection

(2018) Titia de Lange   Annual Review of Genetics

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome

(2018) Ching-Ho Chang et al.   GENETICS

MTV sings jubilation for telomere biology in Drosophila

(2017) Lin Cheng et al.   FLY

A Pooled Sequencing Approach Identifies a Candidate Meiotic Driver inDrosophila

(2017) Kevin H.-C. Wei et al.   GENETICS

Telomeric Retrotransposon HeT-A Contains a Bidirectional Promoter that Initiates Divergent Transcription of piRNA Precursors in Drosophila Germline

(2017) Elizaveta Radion et al.   JOURNAL OF MOLECULAR BIOLOGY

A heterochromatin-dependent transcription machinery drives piRNA expression

(2017) Peter Refsing Andersen et al.   NATURE

Saccharomyces genome database informs human biology

(2017) Marek S Skrzypek et al.   NUCLEIC ACIDS RESEARCH

Evolution of sequence-specific anti-silencing systems in Arabidopsis

(2017) Aoi Hosaka et al.   Nature Communications

A Pooled Sequencing Approach Identifies a Candidate Meiotic Driver inDrosophila

(2017) Kevin H.-C. Wei et al.   GENETICS

Direct interrogation of the role of H3K9 in metazoan heterochromatin function

(2016) Taylor J.R. Penke et al.   GENES & DEVELOPMENT

Recurrent Innovation at Genes Required for Telomere Integrity inDrosophila

(2016) Yuh Chwen G. Lee et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors

(2016) Yung-Chia Ariel Chen et al.   MOLECULAR CELL

The hnRNP A1 homolog Hrb87F/Hrp36 is important for telomere maintenance in Drosophila melanogaster

(2015) Anand K. Singh et al.   CHROMOSOMA

Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression

(2015) Guilherme B. Dias et al.   CHROMOSOME RESEARCH

Tandem Duplications and the Limits of Natural Selection in Drosophila yakuba and Drosophila simulans

(2015) Rebekah L. Rogers et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila

(2014) Fabio Mohn et al.   CELL

Drosophila Telomeres: A Variation on the Telomerase Theme

(2014) Mary-Lou Pardue et al.   FLY

Landscape of Standing Variation for Tandem Duplications in Drosophila yakuba and Drosophila simulans

(2014) Rebekah L. Rogers et al.   MOLECULAR BIOLOGY AND EVOLUTION

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons

(2014) Frank M. J. Jacobs et al.   NATURE

Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor

(2013) Yu Fu et al.   EMBO JOURNAL

Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state

(2013) A. Le Thomas et al.   GENES & DEVELOPMENT

A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway

(2013) Benjamin Czech et al.   MOLECULAR CELL

Stepwise Evolution of Essential Centromere Function in a Drosophila Neogene

(2013) B. D. Ross et al.   SCIENCE

Position-Effect Variegation, Heterochromatin Formation, and Gene Silencing in Drosophila

(2013) S. C. R. Elgin et al.   Cold Spring Harbor Perspectives in Biology

Maternal Depletion of Piwi, a Component of the RNAi System, Impacts Heterochromatin Formation in Drosophila

(2013) Tingting Gu et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression

(2012) Grzegorz Sienski et al.   CELL

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Drosophila cell cycle under arrest: Uncapped telomeres plead guilty

(2011) Giovanni Cenci   CELL CYCLE

piRNA Production Requires Heterochromatin Formation in Drosophila

(2011) Prashanth Rangan et al.   CURRENT BIOLOGY

Retrotransposons that maintain chromosome ends

(2011) M.-L. Pardue et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selfish genetic elements, genetic conflict, and evolutionary innovation

(2011) J. H. Werren   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Terminin: A protein complex that mediates epigenetic maintenance ofDrosophilatelomeres

(2011) Grazia D. Raffa et al.   Nucleus

Epigenomics of centromere assembly and function

(2010) Kaitlin M Stimpson et al.   CURRENT OPINION IN CELL BIOLOGY

HipHop interacts with HOAP and HP1 to protect Drosophila telomeres in a sequence-independent manner

(2010) Guanjun Gao et al.   EMBO JOURNAL

Adaptive Evolution of Foundation Kinetochore Proteins in Primates

(2010) Mary G. Schueler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient and Recent Adaptive Evolution of Primate Non-Homologous End Joining Genes

(2010) Ann Demogines et al.   PLoS Genetics

Evolutionary dynamics of the LTR retrotransposons roo and rooA inferred from twelve complete Drosophila genomes

(2009) Nicole de la Chaux et al.   BMC EVOLUTIONARY BIOLOGY

The Drosophila HP1 Homolog Rhino Is Required for Transposon Silencing and piRNA Production by Dual-Strand Clusters

(2009) Carla Klattenhoff et al.   CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes

(2008) Hsiao-Pei Yang et al.   GENOME BIOLOGY