Genome-wide identification of Aedes albopictus long noncoding RNAs and their association with dengue and Zika virus infection

The Developmental Transcriptome of Aedes albopictus, a Major Worldwide Human Disease Vector

(2020) Stephanie Gamez et al.   G3-Genes Genomes Genetics

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

(2019) Alexandra L. McCorkindale et al.   DEVELOPMENT

ZIKA virus entry mechanisms in human cells

(2019) Almerinda Agrelli et al.   INFECTION GENETICS AND EVOLUTION

CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing

(2019) Kornel Labun et al.   NUCLEIC ACIDS RESEARCH

Systematic identification of intergenic long-noncoding RNAs in mouse retinas using full-length isoform sequencing

(2019) Ying Wan et al.   BMC GENOMICS

Systematic identification and characterization of Aedes aegypti long noncoding RNAs (lncRNAs)

(2019) Azali Azlan et al.   Scientific Reports

Functional Classification and Experimental Dissection of Long Noncoding RNAs

(2018) Florian Kopp et al.   CELL

Assessment of Aedes albopictus reference genes for quantitative PCR at different stages of development

(2018) Najat Dzaki et al.   PLoS One

Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species

(2018) Jinfang Zhang et al.   Scientific Reports

Dengue serotype-specific immune response in Aedes aegypti and Aedes albopictus

(2017) Chelsea T Smartt et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

(2017) Yu-Jian Kang et al.   NUCLEIC ACIDS RESEARCH

The New RNA World: Growing Evidence for Long Noncoding RNA Functionality

(2017) Allison Jandura et al.   TRENDS IN GENETICS

Global Transcriptome Analysis of Aedes aegypti Mosquitoes in Response to Zika Virus Infection

(2017) Kayvan Etebari et al.   mSphere

Aedes aegypti Piwi4 Is a Noncanonical PIWI Protein Involved in Antiviral Responses

(2017) Margus Varjak et al.   mSphere

Dengue virus serotype 2 infection alters midgut and carcass gene expression in the Asian tiger mosquito, Aedes albopictus

(2017) Hitoshi Tsujimoto et al.   PLoS One

Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa

(2017) Zhonglin Tang et al.   Scientific Reports

Evaluation of reference genes at different developmental stages for quantitative real-time PCR in Aedes aegypti

(2017) Najat Dzaki et al.   Scientific Reports

Critical roles of long noncoding RNAs inDrosophilaspermatogenesis

(2016) Kejia Wen et al.   GENOME RESEARCH

Distinct temporal changes in host cell lncRNA expression during the course of an adenovirus infection

(2016) Hongxing Zhao et al.   VIROLOGY

Identification of Aedes aegypti Long Intergenic Non-coding RNAs and Their Association with Wolbachia and Dengue Virus Infection

(2016) Kayvan Etebari et al.   PLoS Neglected Tropical Diseases

Ade novotranscriptome of the Malpighian tubules in non-blood-fed and blood-fed Asian tiger mosquitoesAedes albopictus: insights into diuresis, detoxification, and blood meal processing

(2016) Carlos J. Esquivel et al.   PeerJ

Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori

(2016) Yuqian Wu et al.   PLoS One

Genome-wide identification and developmental expression profiling of long noncoding RNAs during Drosophila metamorphosis

(2016) Bing Chen et al.   Scientific Reports

Simple reverse genetics systems for Asian and African Zika viruses

(2016) Thérèse Atieh et al.   Scientific Reports

PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment

(2015) Patrik Koskinen et al.   BIOINFORMATICS

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genome sequence of the Asian Tiger mosquito,Aedes albopictus, reveals insights into its biology, genetics, and evolution

(2015) Xiao-Guang Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species

(2015) Hadas Hezroni et al.   Cell Reports

A draft genome sequence of an invasive mosquito: an ItalianAedes albopictus

(2015) Vicky Dritsou et al.   Pathogens and Global Health

Global Transcriptional Dynamics of Diapause Induction in Non-Blood-Fed and Blood-Fed Aedes albopictus

(2015) Xin Huang et al.   PLoS Neglected Tropical Diseases

Genome wide discovery of long intergenic non-coding RNAs in Diamondback moth (Plutella xylostella) and their expression in insecticide resistant strains

(2015) Kayvan Etebari et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme

(2014) Aimin Li et al.   BMC BIOINFORMATICS

Transcriptional regulatory functions of nuclear long noncoding RNAs

(2014) Keith W. Vance et al.   TRENDS IN GENETICS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus

(2013) M. F. Poelchau et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

The invasive mosquito species Aedes albopictus: current knowledge and future perspectives

(2013) Mariangela Bonizzoni et al.   TRENDS IN PARASITOLOGY

Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB

(2013) Vidisha Tripathi et al.   PLoS Genetics

Random Codon Re-encoding Induces Stable Reduction of Replicative Fitness of Chikungunya Virus in Primate and Mosquito Cells

(2013) Antoine Nougairede et al.   PLoS Pathogens

Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9

(2013) A. R. Bassett et al.   Biology Open

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Recent Introduction and Rapid Dissemination of Chikungunya Virus and Dengue Virus Serotype 2 Associated With Human and Mosquito Coinfections in Gabon, Central Africa

(2012) M. Caron et al.   CLINICAL INFECTIOUS DISEASES

Long noncoding RNAs in C. elegans

(2012) J.-W. Nam et al.   GENOME RESEARCH

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Complex Modulation of the Aedes aegypti Transcriptome in Response to Dengue Virus Infection

(2012) Mariangela Bonizzoni et al.   PLoS One

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Enzyme-Linked Immunosorbent Assay-Format Tissue Culture Infectious Dose-50 Test for Titrating Dengue Virus

(2011) Jie Li et al.   PLoS One

Insights into the Internalization and Retrograde Trafficking of Dengue 2 Virus in BHK-21 Cells

(2011) Nidhi Shrivastava et al.   PLoS One

POST, partner of stromal interaction molecule 1 (STIM1), targets STIM1 to multiple transporters

(2011) G. Krapivinsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alterations in the Aedes aegypti Transcriptome during Infection with West Nile, Dengue and Yellow Fever Viruses

(2011) Tonya M. Colpitts et al.   PLoS Pathogens

Virus-Induced Ca2+ Influx Extends Survival of West Nile Virus-Infected Cells

(2010) S. V. Scherbik et al.   JOURNAL OF VIROLOGY

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

(2010) Vidisha Tripathi et al.   MOLECULAR CELL

Dengue Virus Inhibits Immune Responses in Aedes aegypti Cells

(2010) Shuzhen Sim et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Viral calciomics: Interplays between Ca2+ and virus

(2009) Yubin Zhou et al.   CELL CALCIUM

Aedes albopictus, an arbovirus vector: From the darkness to the light

(2009) C. Paupy et al.   MICROBES AND INFECTION

Functional entry of dengue virus into Aedes albopictus mosquito cells is dependent on clathrin-mediated endocytosis

(2008) E. G. Acosta et al.   JOURNAL OF GENERAL VIROLOGY

Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes

(2008) Jon Bohlin et al.   PLoS Computational Biology