Genome-wide identification of Aedes albopictus long noncoding RNAs and their association with dengue and Zika virus infection
出版年份 2021 全文链接
标题
Genome-wide identification of Aedes albopictus long noncoding RNAs and their association with dengue and Zika virus infection
作者
关键词
Long non-coding RNA, Dengue virus, Mosquitoes, Genomics, Transcriptome analysis, Aedes aegypti, RNA sequencing, Viral replication
出版物
PLoS Neglected Tropical Diseases
Volume 15, Issue 1, Pages e0008351
出版商
Public Library of Science (PLoS)
发表日期
2021-01-23
DOI
10.1371/journal.pntd.0008351
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- The Developmental Transcriptome of Aedes albopictus, a Major Worldwide Human Disease Vector
- (2020) Stephanie Gamez et al. G3-Genes Genomes Genetics
- A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs
- (2019) Alexandra L. McCorkindale et al. DEVELOPMENT
- ZIKA virus entry mechanisms in human cells
- (2019) Almerinda Agrelli et al. INFECTION GENETICS AND EVOLUTION
- CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing
- (2019) Kornel Labun et al. NUCLEIC ACIDS RESEARCH
- Systematic identification of intergenic long-noncoding RNAs in mouse retinas using full-length isoform sequencing
- (2019) Ying Wan et al. BMC GENOMICS
- Systematic identification and characterization of Aedes aegypti long noncoding RNAs (lncRNAs)
- (2019) Azali Azlan et al. Scientific Reports
- Functional Classification and Experimental Dissection of Long Noncoding RNAs
- (2018) Florian Kopp et al. CELL
- Assessment of Aedes albopictus reference genes for quantitative PCR at different stages of development
- (2018) Najat Dzaki et al. PLoS One
- Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species
- (2018) Jinfang Zhang et al. Scientific Reports
- Dengue serotype-specific immune response in Aedes aegypti and Aedes albopictus
- (2017) Chelsea T Smartt et al. MEMORIAS DO INSTITUTO OSWALDO CRUZ
- CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
- (2017) Yu-Jian Kang et al. NUCLEIC ACIDS RESEARCH
- The New RNA World: Growing Evidence for Long Noncoding RNA Functionality
- (2017) Allison Jandura et al. TRENDS IN GENETICS
- Global Transcriptome Analysis of Aedes aegypti Mosquitoes in Response to Zika Virus Infection
- (2017) Kayvan Etebari et al. mSphere
- Aedes aegypti Piwi4 Is a Noncanonical PIWI Protein Involved in Antiviral Responses
- (2017) Margus Varjak et al. mSphere
- Dengue virus serotype 2 infection alters midgut and carcass gene expression in the Asian tiger mosquito, Aedes albopictus
- (2017) Hitoshi Tsujimoto et al. PLoS One
- Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa
- (2017) Zhonglin Tang et al. Scientific Reports
- Evaluation of reference genes at different developmental stages for quantitative real-time PCR in Aedes aegypti
- (2017) Najat Dzaki et al. Scientific Reports
- Critical roles of long noncoding RNAs inDrosophilaspermatogenesis
- (2016) Kejia Wen et al. GENOME RESEARCH
- Distinct temporal changes in host cell lncRNA expression during the course of an adenovirus infection
- (2016) Hongxing Zhao et al. VIROLOGY
- Identification of Aedes aegypti Long Intergenic Non-coding RNAs and Their Association with Wolbachia and Dengue Virus Infection
- (2016) Kayvan Etebari et al. PLoS Neglected Tropical Diseases
- Ade novotranscriptome of the Malpighian tubules in non-blood-fed and blood-fed Asian tiger mosquitoesAedes albopictus: insights into diuresis, detoxification, and blood meal processing
- (2016) Carlos J. Esquivel et al. PeerJ
- Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori
- (2016) Yuqian Wu et al. PLoS One
- Genome-wide identification and developmental expression profiling of long noncoding RNAs during Drosophila metamorphosis
- (2016) Bing Chen et al. Scientific Reports
- Simple reverse genetics systems for Asian and African Zika viruses
- (2016) Thérèse Atieh et al. Scientific Reports
- PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment
- (2015) Patrik Koskinen et al. BIOINFORMATICS
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Genome sequence of the Asian Tiger mosquito,Aedes albopictus, reveals insights into its biology, genetics, and evolution
- (2015) Xiao-Guang Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
- (2015) Hadas Hezroni et al. Cell Reports
- A draft genome sequence of an invasive mosquito: an ItalianAedes albopictus
- (2015) Vicky Dritsou et al. Pathogens and Global Health
- Global Transcriptional Dynamics of Diapause Induction in Non-Blood-Fed and Blood-Fed Aedes albopictus
- (2015) Xin Huang et al. PLoS Neglected Tropical Diseases
- Genome wide discovery of long intergenic non-coding RNAs in Diamondback moth (Plutella xylostella) and their expression in insecticide resistant strains
- (2015) Kayvan Etebari et al. Scientific Reports
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
- (2014) Aimin Li et al. BMC BIOINFORMATICS
- Transcriptional regulatory functions of nuclear long noncoding RNAs
- (2014) Keith W. Vance et al. TRENDS IN GENETICS
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus
- (2013) M. F. Poelchau et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
- (2013) Liguo Wang et al. NUCLEIC ACIDS RESEARCH
- The invasive mosquito species Aedes albopictus: current knowledge and future perspectives
- (2013) Mariangela Bonizzoni et al. TRENDS IN PARASITOLOGY
- Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB
- (2013) Vidisha Tripathi et al. PLoS Genetics
- Random Codon Re-encoding Induces Stable Reduction of Replicative Fitness of Chikungunya Virus in Primate and Mosquito Cells
- (2013) Antoine Nougairede et al. PLoS Pathogens
- Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9
- (2013) A. R. Bassett et al. Biology Open
- Genome Regulation by Long Noncoding RNAs
- (2012) John L. Rinn et al. Annual Review of Biochemistry
- Recent Introduction and Rapid Dissemination of Chikungunya Virus and Dengue Virus Serotype 2 Associated With Human and Mosquito Coinfections in Gabon, Central Africa
- (2012) M. Caron et al. CLINICAL INFECTIOUS DISEASES
- Long noncoding RNAs in C. elegans
- (2012) J.-W. Nam et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- Complex Modulation of the Aedes aegypti Transcriptome in Response to Dengue Virus Infection
- (2012) Mariangela Bonizzoni et al. PLoS One
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
- (2011) A. Pauli et al. GENOME RESEARCH
- Enzyme-Linked Immunosorbent Assay-Format Tissue Culture Infectious Dose-50 Test for Titrating Dengue Virus
- (2011) Jie Li et al. PLoS One
- Insights into the Internalization and Retrograde Trafficking of Dengue 2 Virus in BHK-21 Cells
- (2011) Nidhi Shrivastava et al. PLoS One
- POST, partner of stromal interaction molecule 1 (STIM1), targets STIM1 to multiple transporters
- (2011) G. Krapivinsky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Alterations in the Aedes aegypti Transcriptome during Infection with West Nile, Dengue and Yellow Fever Viruses
- (2011) Tonya M. Colpitts et al. PLoS Pathogens
- Virus-Induced Ca2+ Influx Extends Survival of West Nile Virus-Infected Cells
- (2010) S. V. Scherbik et al. JOURNAL OF VIROLOGY
- The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation
- (2010) Vidisha Tripathi et al. MOLECULAR CELL
- Dengue Virus Inhibits Immune Responses in Aedes aegypti Cells
- (2010) Shuzhen Sim et al. PLoS One
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Viral calciomics: Interplays between Ca2+ and virus
- (2009) Yubin Zhou et al. CELL CALCIUM
- Aedes albopictus, an arbovirus vector: From the darkness to the light
- (2009) C. Paupy et al. MICROBES AND INFECTION
- Functional entry of dengue virus into Aedes albopictus mosquito cells is dependent on clathrin-mediated endocytosis
- (2008) E. G. Acosta et al. JOURNAL OF GENERAL VIROLOGY
- Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
- (2008) Jon Bohlin et al. PLoS Computational Biology
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