Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
Authors
Keywords
-
Journal
Genome Medicine
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-12-08
DOI
10.1186/s13073-020-00812-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Expanded encyclopaedias of DNA elements in the human and mouse genomes
- (2020) Jill E. Moore et al. NATURE
- Circular RNA profiling provides insights into their subcellular distribution and molecular characteristics in HepG2 cells
- (2019) Ju Zhang et al. RNA Biology
- Computational approaches for circular RNA analysis
- (2019) Tobias Jakobi et al. Wiley Interdisciplinary Reviews-RNA
- The Landscape of Circular RNA in Cancer
- (2019) Josh N. Vo et al. CELL
- Widespread and Functional RNA Circularization in Localized Prostate Cancer
- (2019) Sujun Chen et al. CELL
- Dysregulation of Circular RNAs in Myotonic Dystrophy Type 1
- (2019) Voellenkle et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- CircCDYL inhibits the expression of C-MYC to suppress cell growth and migration in bladder cancer
- (2019) Jiayin Sun et al. Artificial Cells Nanomedicine and Biotechnology
- A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain
- (2018) Benjamin Kleaveland et al. CELL
- A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs
- (2018) Chuan Huang et al. GENES & DEVELOPMENT
- Insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1) in cancer
- (2018) Xinwei Huang et al. Journal of Hematology & Oncology
- Sequence, Structure, and Context Preferences of Human RNA Binding Proteins
- (2018) Daniel Dominguez et al. MOLECULAR CELL
- QuantSeq 3′ mRNA sequencing for RNA quantification
- (2018) Pamela Moll et al. NATURE METHODS
- Circular RNAs: Promising Biomarkers for Human Diseases
- (2018) Zhongrong Zhang et al. EBioMedicine
- The interaction of circRNAs and RNA binding proteins: An important part of circRNA maintenance and function
- (2018) Jiankun Zang et al. JOURNAL OF NEUROSCIENCE RESEARCH
- COSMIC: the Catalogue Of Somatic Mutations In Cancer
- (2018) John G Tate et al. NUCLEIC ACIDS RESEARCH
- Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction
- (2017) Yantian Xu et al. INTERNATIONAL JOURNAL OF ONCOLOGY
- IGF2BP1: a novel binding protein of p38 MAPK
- (2017) Jacob Rini et al. MOLECULAR AND CELLULAR BIOCHEMISTRY
- Sensing Self and Foreign Circular RNAs by Intron Identity
- (2017) Y. Grace Chen et al. MOLECULAR CELL
- Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection
- (2017) Xiang Li et al. MOLECULAR CELL
- DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
- (2017) Tuğçe Aktaş et al. NATURE
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing
- (2017) Teng Fei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Circular RNAs are abundantly expressed and upregulated during human epidermal stem cell differentiation
- (2017) Lasse Sommer Kristensen et al. RNA Biology
- Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1
- (2017) Kotb Abdelmohsen et al. RNA Biology
- Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function
- (2017) Monika Piwecka et al. SCIENCE
- FUS affects circular RNA expression in murine embryonic stem cell-derived motor neurons
- (2017) Lorenzo Errichelli et al. Nature Communications
- Identifying and Characterizing circRNA-Protein Interaction
- (2017) William W Du et al. Theranostics
- Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer
- (2017) Trine Line Hauge Okholm et al. npj Genomic Medicine
- Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma
- (2016) Jakob Hedegaard et al. CANCER CELL
- Induction of tumor apoptosis through a circular RNA enhancing Foxo3 activity
- (2016) William W Du et al. CELL DEATH AND DIFFERENTIATION
- RBM20 Regulates Circular RNA Production From the Titin Gene
- (2016) Mohsin A Khan et al. CIRCULATION RESEARCH
- GRWD1 negatively regulates p53 via the RPL11–MDM2 pathway and promotes tumorigenesis
- (2016) Kota Kayama et al. EMBO REPORTS
- Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
- (2016) Eric L Van Nostrand et al. NATURE METHODS
- Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2
- (2016) William W. Du et al. NUCLEIC ACIDS RESEARCH
- CircRNA-protein complexes: IMP3 protein component defines subfamily of circRNPs
- (2016) Tim Schneider et al. Scientific Reports
- The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion
- (2015) Guramrit Singh et al. Annual Review of Biochemistry
- The RNA Binding Protein Quaking Regulates Formation of circRNAs
- (2015) Simon J. Conn et al. CELL
- Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis
- (2015) Yan Li et al. CELL RESEARCH
- PLA2G2A overexpression is associated with poor therapeutic response and inferior outcome in rectal cancer patients receiving neoadjuvant concurrent chemoradiotherapy
- (2015) Hong-Lin He et al. HISTOPATHOLOGY
- Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity
- (2015) Xintian You et al. NATURE NEUROSCIENCE
- Cdt1-binding protein GRWD1 is a novel histone-binding protein that facilitates MCM loading through its influence on chromatin architecture
- (2015) Nozomi Sugimoto et al. NUCLEIC ACIDS RESEARCH
- Exon Circularization Requires Canonical Splice Signals
- (2015) Stefan Starke et al. Cell Reports
- Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals
- (2015) Andranik Ivanov et al. Cell Reports
- Diverse roles of the nucleic acid-binding protein KHSRP in cell differentiation and disease
- (2015) Paola Briata et al. Wiley Interdisciplinary Reviews-RNA
- The Molecular Signatures Database Hallmark Gene Set Collection
- (2015) Arthur Liberzon et al. Cell Systems
- Identification and Characterization of Circular RNAs As a New Class of Putative Biomarkers in Human Blood
- (2015) Sebastian Memczak et al. PLoS One
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Complementary Sequence-Mediated Exon Circularization
- (2014) Xiao-Ou Zhang et al. CELL
- The Landscape of MicroRNA, Piwi-Interacting RNA, and Circular RNA in Human Saliva
- (2014) J. H. Bahn et al. CLINICAL CHEMISTRY
- circRNA Biogenesis Competes with Pre-mRNA Splicing
- (2014) Reut Ashwal-Fluss et al. MOLECULAR CELL
- Detecting and characterizing circular RNAs
- (2014) William R Jeck et al. NATURE BIOTECHNOLOGY
- circBase: a database for circular RNAs
- (2014) Petar Glažar et al. RNA
- Circular RNA and miR-7 in Cancer
- (2013) T. B. Hansen et al. CANCER RESEARCH
- Natural RNA circles function as efficient microRNA sponges
- (2013) Thomas B. Hansen et al. NATURE
- Circular RNAs are a large class of animal RNAs with regulatory potency
- (2013) Sebastian Memczak et al. NATURE
- Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
- (2013) Michael T Lovci et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- IGF2BP1 promotes cell migration by regulating MK5 and PTEN signaling
- (2012) N. Stohr et al. GENES & DEVELOPMENT
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types
- (2012) Julia Salzman et al. PLoS One
- Circular RNAs are abundant, conserved, and associated with ALU repeats
- (2012) W. R. Jeck et al. RNA
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- ANALYSIS OF qPCR DATA BY CONVERTING EXPONENTIALLY RELATED Ct VALUES INTO LINEARLY RELATED X0 VALUES
- (2010) RUNE THOMSEN et al. Journal of Bioinformatics and Computational Biology
- PLA2 (group IIA phospholipase A2) as a prognostic determinant in stage II colorectal carcinoma
- (2009) A. Buhmeida et al. ANNALS OF ONCOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- GAGE: generally applicable gene set enrichment for pathway analysis
- (2009) Weijun Luo et al. BMC BIOINFORMATICS
- The Spliceosome: Design Principles of a Dynamic RNP Machine
- (2009) Markus C. Wahl et al. CELL
- RNA-binding proteins and post-transcriptional gene regulation
- (2008) Tina Glisovic et al. FEBS LETTERS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started