The INO80 Complex Regulates Epigenetic Inheritance of Heterochromatin

Hap2–Ino80-facilitated transcription promotes de novo establishment of CENP-A chromatin

(2020) Puneet P. Singh et al.   GENES & DEVELOPMENT

Chromatin replication and epigenetic cell memory

(2020) Kathleen R. Stewart-Morgan et al.   NATURE CELL BIOLOGY

An H3K9 methylation-dependent protein interaction regulates the non-enzymatic functions of a putative histone demethylase

(2020) Gulzhan Raiymbek et al.   eLife

Chromatin-remodeling links metabolic signaling to gene expression

(2020) Ashby J. Morrison   Molecular Metabolism

Epigenetic gene silencing by heterochromatin primes fungal resistance

(2020) Sito Torres-Garcia et al.   NATURE

Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe1

(2019) Masato Sorida et al.   PLoS Genetics

Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance

(2019) Nahid Iglesias et al.   MOLECULAR CELL

Positioning Heterochromatin at the Nuclear Periphery Suppresses Histone Turnover to Promote Epigenetic Inheritance

(2019) Sahana Holla et al.   CELL

Polymerase pausing induced by sequence-specific RNA-binding protein drives heterochromatin assembly

(2018) Jahan-Yar Parsa et al.   GENES & DEVELOPMENT

Iron homeostasis regulates facultative heterochromatin assembly in adaptive genome control

(2018) Pamela S. Gallagher et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Replication-Coupled Nucleosome Assembly in the Passage of Epigenetic Information and Cell Identity

(2018) Albert Serra-Cardona et al.   TRENDS IN BIOCHEMICAL SCIENCES

Iron homeostasis regulates facultative heterochromatin assembly in adaptive genome control

(2018) Pamela S. Gallagher et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Automethylation-induced conformational switch in Clr4 (Suv39h) maintains epigenetic stability

(2018) Nahid Iglesias et al.   NATURE

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information

(2018) Antonia Lock et al.   NUCLEIC ACIDS RESEARCH

Ten principles of heterochromatin formation and function

(2017) Robin C. Allshire et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The INO80 remodeller in transcription, replication and repair

(2017) Jérôme Poli et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA sequence-dependent epigenetic inheritance of gene silencing and histone H3K9 methylation

(2017) Xiaoyi Wang et al.   SCIENCE

Genomic Nucleosome Organization Reconstituted with Pure Proteins

(2016) Nils Krietenstein et al.   CELL

Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress

(2016) Jérôme Poli et al.   GENES & DEVELOPMENT

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

The Paf1 complex factors Leo1 and Paf1 promote local histone turnover to modulate chromatin states in fission yeast

(2015) L. Sadeghi et al.   EMBO REPORTS

The Ino80 complex prevents invasion of euchromatin into silent chromatin

(2015) Yong Xue et al.   GENES & DEVELOPMENT

INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation

(2015) Anne Lafon et al.   MOLECULAR CELL

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Restricted epigenetic inheritance of H3K9 methylation

(2015) P. N. C. B. Audergon et al.   SCIENCE

RNAi and Heterochromatin Assembly

(2015) Robert Martienssen et al.   Cold Spring Harbor Perspectives in Biology

Rapid epigenetic adaptation to uncontrolled heterochromatin spreading

(2015) Jiyong Wang et al.   eLife

Epigenetic inheritance uncoupled from sequence-specific recruitment

(2014) K. Ragunathan et al.   SCIENCE

Epigenetic inheritance: histone bookmarks across generations

(2014) Eric I. Campos et al.   TRENDS IN CELL BIOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near +1 Nucleosomes

(2013) Kuangyu Yen et al.   CELL

Elimination of shelterin components bypasses RNAi for pericentric heterochromatin assembly

(2013) X. Tadeo et al.   GENES & DEVELOPMENT

HDAC-mediated suppression of histone turnover promotes epigenetic stability of heterochromatin

(2013) Ozan Aygün et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers

(2012) Kuangyu Yen et al.   CELL

Mechanisms for the Inheritance of Chromatin States

(2011) Danesh Moazed   CELL

Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions

(2011) B. D. Reddy et al.   GENES & DEVELOPMENT

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II

(2011) Mikel Zaratiegui et al.   NATURE

Determinants of nucleosome organization in primary human cells

(2011) Anton Valouev et al.   NATURE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

RNA Elimination Machinery Targeting Meiotic mRNAs Promotes Facultative Heterochromatin Formation

(2011) M. Zofall et al.   SCIENCE

Stc1: A Critical Link between RNAi and Chromatin Modification Required for Heterochromatin Integrity

(2010) Elizabeth H. Bayne et al.   CELL

The INO80 ATP-Dependent Chromatin Remodeling Complex Is a Nucleosome Spacing Factor

(2010) M. Udugama et al.   MOLECULAR AND CELLULAR BIOLOGY

Histone Variant H2A.Z Regulates Centromere Silencing and Chromosome Segregation in Fission Yeast

(2009) Haitong Hou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fission Yeast Iec1-Ino80-Mediated Nucleosome Eviction Regulates Nucleotide and Phosphate Metabolism

(2009) C. J. Hogan et al.   MOLECULAR AND CELLULAR BIOLOGY

Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs

(2009) Martin Zofall et al.   NATURE

Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes

(2009) Ashby J Morrison et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Diverse roles of HP1 proteins in heterochromatin assembly and functions in fission yeast

(2009) T. Fischer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthetic Heterochromatin Bypasses RNAi and Centromeric Repeats to Establish Functional Centromeres

(2009) A. Kagansky et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA Interference Guides Histone Modification during the S Phase of Chromosomal Replication

(2008) Anna Kloc et al.   CURRENT BIOLOGY

HP1 Proteins Form Distinct Complexes and Mediate Heterochromatic Gene Silencing by Nonoverlapping Mechanisms

(2008) Mohammad R. Motamedi et al.   MOLECULAR CELL

Cell cycle control of centromeric repeat transcription and heterochromatin assembly

(2008) Ee Sin Chen et al.   NATURE

Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin

(2008) Ke Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY