Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing
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Title
Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-11-26
DOI
10.1038/s41467-020-19787-6
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Note: Only part of the references are listed.- Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification
- (2020) Matthew T Parker et al. eLife
- Limits in the detection of m6A changes using MeRIP/m6A-seq
- (2020) Alexa B. R. McIntyre et al. Scientific Reports
- m6A mRNA Destiny: Chained to the rhYTHm by the YTH-Containing Proteins
- (2019) Ditipriya Hazra et al. Genes
- Single-molecule sequencing detection of N6-methyladenine in microbial reference materials
- (2019) Alexa B. R. McIntyre et al. Nature Communications
- Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen
- (2019) Daniel P. Depledge et al. Nature Communications
- Deciphering the “m6A Code” via Antibody-Independent Quantitative Profiling
- (2019) Miguel Angel Garcia-Campos et al. CELL
- Regulation of Viral Infection by the RNA Modification N6-methyladenosine
- (2019) Graham D. Williams et al. Annual Review of Virology
- Regulation of Co-transcriptional Pre-mRNA Splicing by m6A through the Low-Complexity Protein hnRNPG
- (2019) Katherine I. Zhou et al. MOLECULAR CELL
- Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base-specific resolution
- (2019) Daniel A. Lorenz et al. RNA
- Viral and cellular interactions during adenovirus DNA replication
- (2019) Matthew Charman et al. FEBS LETTERS
- Altered m6A Modification of Specific Cellular Transcripts Affects Flaviviridae Infection
- (2019) Nandan S. Gokhale et al. MOLECULAR CELL
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation
- (2018) Huilin Huang et al. NATURE CELL BIOLOGY
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- Transient N-6-Methyladenosine Transcriptome Sequencing Reveals a Regulatory Role of m6A in Splicing Efficiency
- (2018) Annita Louloupi et al. Cell Reports
- Nuclear m6A reader YTHDC1 regulates alternative polyadenylation and splicing during mouse oocyte development
- (2018) Seth D. Kasowitz et al. PLoS Genetics
- N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi's sarcoma-associated herpesvirus infection
- (2018) Charles R. Hesser et al. PLoS Pathogens
- Addition of m6A to SV40 late mRNAs enhances viral structural gene expression and replication
- (2018) Kevin Tsai et al. PLoS Pathogens
- N6-methyladenosine modification of hepatitis B virus RNA differentially regulates the viral life cycle
- (2018) Hasan Imam et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Refined RIP-seq protocol for epitranscriptome analysis with low input materials
- (2018) Yong Zeng et al. PLOS BIOLOGY
- RNA m6 A modification enzymes shape innate responses to DNA by regulating interferon β
- (2018) Rosa M. Rubio et al. GENES & DEVELOPMENT
- m6A modification controls the innate immune response to infection by targeting type I interferons
- (2018) Roni Winkler et al. NATURE IMMUNOLOGY
- N 6-methyladenosine modification and METTL3 modulate enterovirus 71 replication
- (2018) Haojie Hao et al. NUCLEIC ACIDS RESEARCH
- Double-slit photoelectron interference in strong-field ionization of the neon dimer
- (2018) Maksim Kunitski et al. Nature Communications
- m 6 A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover
- (2017) Shengdong Ke et al. GENES & DEVELOPMENT
- Kaposi's Sarcoma-Associated Herpesvirus Utilizes and Manipulates RNA N 6 -Adenosine Methylation To Promote Lytic Replication
- (2017) Fengchun Ye et al. JOURNAL OF VIROLOGY
- Metabolic labeling and recovery of nascent RNA to accurately quantify mRNA stability
- (2017) Joseph Russo et al. METHODS
- Identifying Host Factors Associated with DNA Replicated During Virus Infection
- (2017) Emigdio D. Reyes et al. MOLECULAR & CELLULAR PROTEOMICS
- Base-Resolution Mapping Reveals Distinct m 1 A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts
- (2017) Xiaoyu Li et al. MOLECULAR CELL
- Epitranscriptome sequencing technologies: decoding RNA modifications
- (2017) Xiaoyu Li et al. NATURE METHODS
- N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3′-end processing
- (2017) Marek Bartosovic et al. NUCLEIC ACIDS RESEARCH
- Pre-mRNA processing includes N 6 methylation of adenosine residues that are retained in mRNA exons and the fallacy of “RNA epigenetics”
- (2017) Robert B. Darnell et al. RNA
- The Epstein-Barr virus miR-BHRF1 microRNAs regulate viral gene expression in cis
- (2017) Brigid Chiyoko Poling et al. VIROLOGY
- YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs
- (2017) Ian A Roundtree et al. eLife
- Viral and cellular N6-methyladenosine and N6,2′-O-dimethyladenosine epitranscriptomes in the KSHV life cycle
- (2017) Brandon Tan et al. Nature Microbiology
- Dynamics of Human and Viral RNA Methylation during Zika Virus Infection
- (2016) Gianluigi Lichinchi et al. Cell Host & Microbe
- N6 -Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection
- (2016) Nandan S. Gokhale et al. Cell Host & Microbe
- Posttranscriptional m 6 A Editing of HIV-1 mRNAs Enhances Viral Gene Expression
- (2016) Edward M. Kennedy et al. Cell Host & Microbe
- Nuclear m 6 A Reader YTHDC1 Regulates mRNA Splicing
- (2016) Wen Xiao et al. MOLECULAR CELL
- The m 6 A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells
- (2016) Shuibin Lin et al. MOLECULAR CELL
- Reversible methylation of m6Am in the 5′ cap controls mRNA stability
- (2016) Jan Mauer et al. NATURE
- Post-transcriptional gene regulation by mRNA modifications
- (2016) Boxuan Simen Zhao et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- N6-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression
- (2016) Nagaraja Tirumuru et al. eLife
- Dynamics of the human and viral m6A RNA methylomes during HIV-1 infection of T cells
- (2016) Gianluigi Lichinchi et al. Nature Microbiology
- N6-methyladenosine Modulates Messenger RNA Translation Efficiency
- (2015) Xiao Wang et al. CELL
- A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation
- (2015) Shengdong Ke et al. GENES & DEVELOPMENT
- RNAN6-methyladenosine methylation in post-transcriptional gene expression regulation
- (2015) Yanan Yue et al. GENES & DEVELOPMENT
- N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
- (2015) Nian Liu et al. NATURE
- Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
- (2015) Bastian Linder et al. NATURE METHODS
- From polyadenylation to splicing: Dual role for mRNA 3' end formation factors
- (2015) Ashish Misra et al. RNA Biology
- Canonical Poly(A) Polymerase Activity Promotes the Decay of a Wide Variety of Mammalian Nuclear RNAs
- (2015) Stefan M. Bresson et al. PLoS Genetics
- High-ResolutionN6-Methyladenosine (m6A) Map Using Photo-Crosslinking-Assisted m6A Sequencing
- (2014) Kai Chen et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
- (2014) Thomas M. Carlile et al. NATURE
- Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
- (2014) Schraga Schwartz et al. Cell Reports
- RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock
- (2013) Jean-Michel Fustin et al. CELL
- N6-methyladenosine-dependent regulation of messenger RNA stability
- (2013) Xiao Wang et al. NATURE
- A METTL3–METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation
- (2013) Jianzhao Liu et al. Nature Chemical Biology
- Multiplex Genome Engineering Using CRISPR/Cas Systems
- (2013) L. Cong et al. SCIENCE
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
- (2012) Guanqun Zheng et al. MOLECULAR CELL
- Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
- (2012) Jeffrey E. Squires et al. NUCLEIC ACIDS RESEARCH
- Streamlined platform for short hairpin RNA interference and transgenesis in cultured mammalian cells
- (2011) P. Khandelia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Direct detection of DNA methylation during single-molecule, real-time sequencing
- (2010) Benjamin A Flusberg et al. NATURE METHODS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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