Epitranscriptome sequencing technologies: decoding RNA modifications
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Title
Epitranscriptome sequencing technologies: decoding RNA modifications
Authors
Keywords
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Journal
NATURE METHODS
Volume 14, Issue 1, Pages 23-31
Publisher
Springer Nature
Online
2016-12-29
DOI
10.1038/nmeth.4110
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Note: Only part of the references are listed.- The emerging epitranscriptomics of long noncoding RNAs
- (2016) Andrew Shafik et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Dynamics of Human and Viral RNA Methylation during Zika Virus Infection
- (2016) Gianluigi Lichinchi et al. Cell Host & Microbe
- N6 -Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection
- (2016) Nandan S. Gokhale et al. Cell Host & Microbe
- Posttranscriptional m 6 A Editing of HIV-1 mRNAs Enhances Viral Gene Expression
- (2016) Edward M. Kennedy et al. Cell Host & Microbe
- Pseudouridine: the fifth RNA nucleotide with renewed interests
- (2016) Xiaoyu Li et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- NML-mediated rRNA base methylation links ribosomal subunit formation to cell proliferation in a p53-dependent manner
- (2016) Tsuyoshi Waku et al. JOURNAL OF CELL SCIENCE
- Pseudouridylation meets next-generation sequencing
- (2016) Maryam Zaringhalam et al. METHODS
- Nuclear m 6 A Reader YTHDC1 Regulates mRNA Splicing
- (2016) Wen Xiao et al. MOLECULAR CELL
- The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA
- (2016) Dan Dominissini et al. NATURE
- Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome
- (2016) Xiaoyu Li et al. Nature Chemical Biology
- m6A-LAIC-seq reveals the census and complexity of the m6A epitranscriptome
- (2016) Benoit Molinie et al. NATURE METHODS
- N6-methyladenosine–encoded epitranscriptomics
- (2016) Nian Liu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Illumina-based RiboMethSeq approach for mapping of 2′-O-Me residues in RNA
- (2016) Virginie Marchand et al. NUCLEIC ACIDS RESEARCH
- Transcriptome-wide distribution and function of RNA hydroxymethylcytosine
- (2016) B. Delatte et al. SCIENCE
- Messenger RNA modifications: Form, distribution, and function
- (2016) W. V. Gilbert et al. SCIENCE
- N6-methyladenosine–encoded epitranscriptomics
- (2016) Nian Liu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- N6-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression
- (2016) Nagaraja Tirumuru et al. eLife
- Dynamics of the human and viral m6A RNA methylomes during HIV-1 infection of T cells
- (2016) Gianluigi Lichinchi et al. Nature Microbiology
- 5′ UTR m6A Promotes Cap-Independent Translation
- (2015) Kate D. Meyer et al. CELL
- HNRNPA2B1 Is a Mediator of m6A-Dependent Nuclear RNA Processing Events
- (2015) Claudio R. Alarcón et al. CELL
- N6-methyladenosine Modulates Messenger RNA Translation Efficiency
- (2015) Xiao Wang et al. CELL
- Formation and Abundance of 5-Hydroxymethylcytosine in RNA
- (2015) Sabrina M. Huber et al. CHEMBIOCHEM
- A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation
- (2015) Shengdong Ke et al. GENES & DEVELOPMENT
- N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
- (2015) Nian Liu et al. NATURE
- Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
- (2015) Xiaoyu Li et al. Nature Chemical Biology
- Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
- (2015) Bastian Linder et al. NATURE METHODS
- Transcriptome-wide dynamics of RNA pseudouridylation
- (2015) John Karijolich et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- High-ResolutionN6-Methyladenosine (m6A) Map Using Photo-Crosslinking-Assisted m6A Sequencing
- (2014) Kai Chen et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- The Pivotal Regulatory Landscape of RNA Modifications
- (2014) Sheng Li et al. Annual Review of Genomics and Human Genetics
- Emerging Roles of RNA Modification: m 6 A and U-Tail
- (2014) Mihye Lee et al. CELL
- Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
- (2014) Schraga Schwartz et al. CELL
- Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase
- (2014) Xiao-Li Ping et al. CELL RESEARCH
- A biochemical landscape of A-to-I RNA editing in the human brain transcriptome
- (2014) M. Sakurai et al. GENOME RESEARCH
- Tet-Mediated Formation of 5-Hydroxymethylcytosine in RNA
- (2014) Lijuan Fu et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
- (2014) Thomas M. Carlile et al. NATURE
- N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
- (2014) Yang Wang et al. NATURE CELL BIOLOGY
- Gene expression regulation mediated through reversible m6A RNA methylation
- (2014) Ye Fu et al. NATURE REVIEWS GENETICS
- The dynamic epitranscriptome: N6-methyladenosine and gene expression control
- (2014) Kate D. Meyer et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Transcriptome-Wide Mapping of Pseudouridines: Pseudouridine Synthases Modify Specific mRNAs in S. cerevisiae
- (2014) Alexander F. Lovejoy et al. PLoS One
- Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
- (2014) Schraga Schwartz et al. Cell Reports
- High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
- (2013) Schraga Schwartz et al. CELL
- N6-methyladenosine-dependent regulation of messenger RNA stability
- (2013) Xiao Wang et al. NATURE
- Identification of direct targets and modified bases of RNA cytosine methyltransferases
- (2013) Vahid Khoddami et al. NATURE BIOTECHNOLOGY
- A METTL3–METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation
- (2013) Jianzhao Liu et al. Nature Chemical Biology
- Identifying RNA editing sites using RNA sequencing data alone
- (2013) Gokul Ramaswami et al. NATURE METHODS
- Novel RNA regulatory mechanisms revealed in the epitranscriptome
- (2013) Yogesh Saletore et al. RNA Biology
- Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
- (2013) N. Liu et al. RNA
- NSun2-Mediated Cytosine-5 Methylation of Vault Noncoding RNA Determines Its Processing into Regulatory Small RNAs
- (2013) Shobbir Hussain et al. Cell Reports
- Transcriptome-Wide Mapping of 5-methylcytidine RNA Modifications in Bacteria, Archaea, and Yeast Reveals m5C within Archaeal mRNAs
- (2013) Sarit Edelheit et al. PLoS Genetics
- Characterizing 5-methylcytosine in the mammalian epitranscriptome
- (2013) Shobbir Hussain et al. GENOME BIOLOGY
- Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome
- (2012) Miao Yu et al. CELL
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
- (2012) Guanqun Zheng et al. MOLECULAR CELL
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
- (2012) Zhiyu Peng et al. NATURE BIOTECHNOLOGY
- Accurate identification of human Alu and non-Alu RNA editing sites
- (2012) Gokul Ramaswami et al. NATURE METHODS
- BC1-FMRP interaction is modulated by 2′-O-methylation: RNA-binding activity of the tudor domain and translational regulation at synapses
- (2012) Caroline Lacoux et al. NUCLEIC ACIDS RESEARCH
- RTL-P: a sensitive approach for detecting sites of 2′-O-methylation in RNA molecules
- (2012) Zhi-Wei Dong et al. NUCLEIC ACIDS RESEARCH
- A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase—extensive moonlighting in mitochondrial tRNA biogenesis
- (2012) Elisa Vilardo et al. NUCLEIC ACIDS RESEARCH
- Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
- (2012) Jeffrey E. Squires et al. NUCLEIC ACIDS RESEARCH
- MODOMICS: a database of RNA modification pathways—2013 update
- (2012) Magdalena A. Machnicka et al. NUCLEIC ACIDS RESEARCH
- Trmt61B is a methyltransferase responsible for 1-methyladenosine at position 58 of human mitochondrial tRNAs
- (2012) T. Chujo et al. RNA
- Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution
- (2012) M. J. Booth et al. SCIENCE
- Comment on "Widespread RNA and DNA Sequence Differences in the Human Transcriptome"
- (2012) J. K. Pickrell et al. SCIENCE
- Comment on "Widespread RNA and DNA Sequence Differences in the Human Transcriptome"
- (2012) W. Lin et al. SCIENCE
- Comment on "Widespread RNA and DNA Sequence Differences in the Human Transcriptome"
- (2012) C. L. Kleinman et al. SCIENCE
- The birth of the Epitranscriptome: deciphering the function of RNA modifications
- (2012) Yogesh Saletore et al. GENOME BIOLOGY
- Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
- (2011) J. H. Bahn et al. GENOME RESEARCH
- rRNA Pseudouridylation Defects Affect Ribosomal Ligand Binding and Translational Fidelity from Yeast to Human Cells
- (2011) Karen Jack et al. MOLECULAR CELL
- N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
- (2011) Guifang Jia et al. Nature Chemical Biology
- Extensive genomic and transcriptional diversity identified through massively parallel DNA and RNA sequencing of eighteen Korean individuals
- (2011) Young Seok Ju et al. NATURE GENETICS
- Widespread RNA and DNA Sequence Differences in the Human Transcriptome
- (2011) M. Li et al. SCIENCE
- Functions and Regulation of RNA Editing by ADAR Deaminases
- (2010) Kazuko Nishikura Annual Review of Biochemistry
- tRNA Stabilization by Modified Nucleotides
- (2010) Yuri Motorin et al. BIOCHEMISTRY
- Box H/ACA Small Ribonucleoproteins
- (2010) Tamás Kiss et al. MOLECULAR CELL
- Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome
- (2010) Masayuki Sakurai et al. Nature Chemical Biology
- Grand Challenge Commentary: RNA epigenetics?
- (2010) Chuan He Nature Chemical Biology
- Elucidating the inosinome: global approaches to adenosine-to-inosine RNA editing
- (2010) Bjorn-Erik Wulff et al. NATURE REVIEWS GENETICS
- Detection of RNA modifications
- (2010) Stefanie Kellner et al. RNA Biology
- Function and detection of 5-methylcytosine in eukaryotic RNA
- (2010) Jeffrey E Squires et al. Epigenomics
- Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy
- (2009) Agnès Baudin-Baillieu et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
- (2009) J. B. Li et al. SCIENCE
- Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
- (2009) M. Tahiliani et al. SCIENCE
- The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
- (2009) S. Kriaucionis et al. SCIENCE
- RNA cytosine methylation analysis by bisulfite sequencing
- (2008) M. Schaefer et al. NUCLEIC ACIDS RESEARCH
- RNA editing in regulating gene expression in the brain
- (2007) James E.C. Jepson et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
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