Bacterial communities in the plant phyllosphere harbour distinct responders to a broad-spectrum pesticide

Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data

(2020) Lucas Czech et al.   BIOINFORMATICS

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Responses of soil microbial biomass and enzyme activity to herbicides imazethapyr and flumioxazin

(2020) Mariane Pertile et al.   Scientific Reports

Responses of phyllosphere microbiota and plant health to application of two different biocontrol agents

(2019) Chong Qin et al.   AMB Express

Peptidoglycan Muropeptides: Release, Perception, and Functions as Signaling Molecules

(2019) Oihane Irazoki et al.   Frontiers in Microbiology

Rare Plankton Subcommunities Are Far More Affected by DNA Extraction Kits Than Abundant Plankton

(2019) Min Liu et al.   Frontiers in Microbiology

Genetic diversity of diazotrophs and total bacteria in the phyllosphere of Pyrus serotina, Prunus armeniaca, Prunus avium, and Vitis vinifera

(2019) Shengxian Liang et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

The tea leaf microbiome shows specific responses to chemical pesticides and biocontrol applications

(2019) Tomislav Cernava et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative microbiome analysis of two different long-term pesticide contaminated soils revealed the anthropogenic influence on functional potential of microbial communities

(2019) Raj Kumar Regar et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of herbicide on non-target microorganisms: Towards a new class of biomarkers?

(2019) Clémence Thiour-Mauprivez et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bacterial communities in the rhizosphere, phyllosphere and endosphere of tomato plants

(2019) Chun-Juan Dong et al.   PLoS One

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

Residual level of dimethachlon in rice-paddy field system and cooked rice determined by gas chromatography with electron capture detector

(2018) Caiyuan Sun et al.   BIOMEDICAL CHROMATOGRAPHY

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

(2018) Pierre Barbera et al.   SYSTEMATIC BIOLOGY

A low proportion of rare bacterial taxa responds to abiotic changes compared with dominant taxa

(2018) Viola Kurm et al.   ENVIRONMENTAL MICROBIOLOGY

Interactive Effects of Pesticides and Nutrients on Microbial Communities Responsible of Litter Decomposition in Streams

(2018) Florent Rossi et al.   Frontiers in Microbiology

Microbial diversity and ecological networks as indicators of environmental quality

(2017) Battle Karimi et al.   Environmental Chemistry Letters

Impact of solar radiation exposure on phyllosphere bacterial community of red-pigmented baby leaf lettuce

(2017) Pilar Truchado et al.   FOOD MICROBIOLOGY

Metabolic defence against oxidative stress: the road less travelled so far

(2017) J. Lemire et al.   JOURNAL OF APPLIED MICROBIOLOGY

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Three years of banning neonicotinoid insecticides based on sub-lethal effects: can we expect to see effects on bees?

(2017) Tjeerd Blacquière et al.   PEST MANAGEMENT SCIENCE

The Phyllosphere: Microbial Jungle at the Plant–Climate Interface

(2016) Corinne Vacher et al.   Annual Review of Ecology Evolution and Systematics

Influence of pesticide seed treatments on rhizosphere fungal and bacterial communities and leaf fungal endophyte communities in maize and soybean

(2016) Rachel Nettles et al.   APPLIED SOIL ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Glyphosate effects on soil rhizosphere-associated bacterial communities

(2016) Molli M. Newman et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biocontrol potential of antagonist Bacillus subtilis Tpb55 against tobacco black shank

(2015) T. Han et al.   BIOCONTROL

Emerging broad-spectrum resistance in Pseudomonas aeruginosa and Acinetobacter baumannii : Mechanisms and epidemiology

(2015) Anaïs Potron et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Exploring mechanisms of resistance to dimethachlone inSclerotinia sclerotiorum

(2015) Md. Jahangir Firoz et al.   PEST MANAGEMENT SCIENCE

Resilience of the Natural Phyllosphere Microbiota of the Grapevine to Chemical and Biological Pesticides

(2014) Michele Perazzolli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Host-specificity among abundant and rare taxa in the sponge microbiome

(2014) Julie Reveillaud et al.   ISME Journal

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches

(2013) Gurdeep Rastogi et al.   FEMS MICROBIOLOGY LETTERS

Volatile Organic Compound Mediated Interactions at the Plant-Microbe Interface

(2013) Robert R. Junker et al.   JOURNAL OF CHEMICAL ECOLOGY

Profile of the culturable microbiome capable of producing acyl-homoserine lactone in the tobacco phyllosphere

(2013) Di Lv et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Distinct Phyllosphere Bacterial Communities on Arabidopsis Wax Mutant Leaves

(2013) Eva E. Reisberg et al.   PLoS One

Role of efflux pumps in the antibiotic resistance of bacteria embedded in a biofilm

(2013) Sara M. Soto   Virulence

The rhizosphere revisited: root microbiomics

(2013) Peter A. H. M. Bakker et al.   Frontiers in Plant Science

Isolation ofArthrobacterspecies from the phyllosphere and demonstration of their epiphytic fitness

(2013) Tanja R. Scheublin et al.   MicrobiologyOpen

Variability of Bacterial Community Composition on Leaves Between and Within Plant Species

(2012) Ido Izhaki et al.   CURRENT MICROBIOLOGY

Neonicotinoids in bees: a review on concentrations, side-effects and risk assessment

(2012) Tjeerd Blacquière et al.   ECOTOXICOLOGY

Effect of Streptomycin Treatment on Bacterial Community Structure in the Apple Phyllosphere

(2012) Erika Yashiro et al.   PLoS One

Metabolic networks to combat oxidative stress in Pseudomonas fluorescens

(2010) Ryan J. Mailloux et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Both Leaf Properties and Microbe-Microbe Interactions Influence Within-Species Variation in Bacterial Population Diversity and Structure in the Lettuce (Lactuca Species) Phyllosphere

(2010) P. J. Hunter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial diversities on unaged and aging flue-cured tobacco leaves estimated by 16S rRNA sequence analysis

(2010) Jingwen Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease

(2009) Martina Kyselková et al.   ISME Journal

Biodegradation of malathion by Acinetobacter johnsonii MA19 and optimization of cometabolism substrates

(2009) Shan XIE et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Induction of systemic resistance, root colonisation and biocontrol activities of the rhizospheric strain of Serratia plymuthica are dependent on N-acyl homoserine lactones

(2008) Yandong Pang et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

The Plant-Associated Bacterium Stenotrophomonas rhizophila Expresses a New Enzyme for the Synthesis of the Compatible Solute Glucosylglycerol

(2008) M. Hagemann et al.   JOURNAL OF BACTERIOLOGY