Environmental DNA metabarcoding reveals winners and losers of global change in coastal waters

Environmental DNA reveals seasonal shifts and potential interactions in a marine community

(2020) Anni Djurhuus et al.   Nature Communications

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events

(2019) Tina E. Berry et al.   PLoS Genetics

Impact of ocean acidification and high solar radiation on productivity and species composition of a late summer phytoplankton community of the coastal Western Antarctic Peninsula

(2019) Jasmin P. Heiden et al.   LIMNOLOGY AND OCEANOGRAPHY

Pelagic harmful algal blooms and climate change: Lessons from nature’s experiments with extremes

(2019) Vera L. Trainer et al.   HARMFUL ALGAE

Anacapa Toolkit : an environmental DNA toolkit for processing multilocus metabarcode datasets

(2019) Emily E. Curd et al.   Methods in Ecology and Evolution

Salish Sea Response to Global Climate Change, Sea Level Rise, and Future Nutrient Loads

(2019) Tarang Khangaonkar et al.   JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS

Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

(2019) Luke E. Holman et al.   Scientific Reports

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

(2019) Ryan P. Kelly et al.   Scientific Reports

Eating in an acidifying ocean: a quantitative review of elevated CO2 effects on the feeding rates of calcifying marine invertebrates

(2018) Jeff C. Clements et al.   HYDROBIOLOGIA

Warming and eutrophication combine to restructure diatoms and dinoflagellates

(2018) Wupeng Xiao et al.   WATER RESEARCH

The effect of tides on nearshore environmental DNA

(2018) Ryan P. Kelly et al.   PeerJ

Effects of ocean acidification on the settlement and metamorphosis of marine invertebrate and fish larvae: a review

(2018) N Espinel-Velasco et al.   MARINE ECOLOGY PROGRESS SERIES

Toxic algal bloom induced by ocean acidification disrupts the pelagic food web

(2018) Ulf Riebesell et al.   Nature Climate Change

Reconciling fisheries catch and ocean productivity

(2017) Charles A. Stock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

(2017) Caroline E. Emilson et al.   Scientific Reports

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Indexed PCR Primers Induce Template-Specific Bias in Large-Scale DNA Sequencing Studies

(2016) James L. O’Donnell et al.   PLoS One

Decrease in coccolithophore calcification and CO2 since the middle Miocene

(2016) Clara T. Bolton et al.   Nature Communications

Genetic signatures of ecological diversity along an urbanization gradient

(2016) Ryan P. Kelly et al.   PeerJ

Metabarcoding of benthic eukaryote communities predicts the ecological condition of estuaries

(2015) Anthony A. Chariton et al.   ENVIRONMENTAL POLLUTION

Present-day and future climate pathways affecting Alexandrium blooms in Puget Sound, WA, USA

(2015) Stephanie K. Moore et al.   HARMFUL ALGAE

An inland sea high nitrate-low chlorophyll (HNLC) region with naturally high pCO2

(2015) James W. Murray et al.   LIMNOLOGY AND OCEANOGRAPHY

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

Contrasting futures for ocean and society from different anthropogenic CO2 emissions scenarios

(2015) J.- P. Gattuso et al.   SCIENCE

In situ changes of tropical crustose coralline algae along carbon dioxide gradients

(2015) K. E. Fabricius et al.   Scientific Reports

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems

(2014) Delphine Lallias et al.   ISME Journal

Temperature and salinity: two climate change stressors affecting early development of the New Zealand sea urchin Evechinus chloroticus

(2014) Natalí J. Delorme et al.   MARINE BIOLOGY

The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol-chloroform-isoamyl alcohol DNA extraction

(2014) Mark A. Renshaw et al.   Molecular Ecology Resources

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Impacts of ocean acidification on marine organisms: quantifying sensitivities and interaction with warming

(2013) Kristy J. Kroeker et al.   GLOBAL CHANGE BIOLOGY

Potential impacts of ocean acidification on the Puget Sound food web

(2013) D. S. Busch et al.   ICES JOURNAL OF MARINE SCIENCE

Responses of marine primary producers to interactions between ocean acidification, solar radiation, and warming

(2012) K Gao et al.   MARINE ECOLOGY PROGRESS SERIES

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Changes in marine dinoflagellate and diatom abundance under climate change

(2012) Stephanie L. Hinder et al.   Nature Climate Change

Divergent ecosystem responses within a benthic marine community to ocean acidification

(2011) K. J. Kroeker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms

(2010) Kristy J. Kroeker et al.   ECOLOGY LETTERS

The projection of species distribution models and the problem of non-analog climate

(2009) Matthew C. Fitzpatrick et al.   BIODIVERSITY AND CONSERVATION

Determination of fish trophic levels in an estuarine system

(2009) S. Pasquaud et al.   ESTUARINE COASTAL AND SHELF SCIENCE

The life of diatoms in the world's oceans

(2009) E. Virginia Armbrust   NATURE

Ocean acidification and calcifying reef organisms: a mesocosm investigation

(2008) P. L. Jokiel et al.   CORAL REEFS

A descriptive analysis of temporal and spatial patterns of variability in Puget Sound oceanographic properties

(2008) Stephanie K. Moore et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Copepods grazing on Coscinodiscus wailesii: a question of size?

(2008) Sandra Jansen   HELGOLAND MARINE RESEARCH

Effects of CO2-driven ocean acidification on the early developmental stages of invertebrates

(2008) H Kurihara   MARINE ECOLOGY PROGRESS SERIES

Phytoplankton Calcification in a High-CO2 World

(2008) M. D. Iglesias-Rodriguez et al.   SCIENCE