Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

Timing of evolutionary innovation: scenarios of evolutionary diversification in a species-rich fungal clade, Boletales

(2019) Hirotoshi Sato et al.   NEW PHYTOLOGIST

Megaphylogeny resolves global patterns of mushroom evolution

(2019) Torda Varga et al.   Nature Ecology & Evolution

Not all ectomycorrhizal fungal lineages are equal

(2019) P. Brandon Matheny et al.   NEW PHYTOLOGIST

Model Choice, Missing Data and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships

(2019) Arun N Prasanna et al.   SYSTEMATIC BIOLOGY

Contemporaneous radiations of fungi and plants linked to symbiosis

(2018) François Lutzoni et al.   Nature Communications

Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation

(2018) D. Vu et al.   STUDIES IN MYCOLOGY

A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective

(2017) Rui-Lin Zhao et al.   FUNGAL DIVERSITY

Asymmetric drop coalescence launches fungal ballistospores with directionality

(2017) Fangjie Liu et al.   Journal of the Royal Society Interface

Is the switch to an ectomycorrhizal state an evolutionary key innovation in mushroom-forming fungi? A case study in the Tricholomatineae (Agaricales)

(2016) Marisol Sánchez-García et al.   EVOLUTION

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Multilocus phylogenetic reconstruction of the Clavariaceae (Agaricales) reveals polyphyly of agaricoid members

(2016) Joshua M. Birkebak et al.   MYCOLOGIA

Evolution of ectomycorrhizas as a driver of diversification and biogeographic patterns in the model mycorrhizal mushroom genus Laccaria

(2016) Andrew W. Wilson et al.   NEW PHYTOLOGIST

Mushrooms use convectively created airflows to disperse their spores

(2016) Emilie Dressaire et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities

(2015) László G. Nagy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Stereopsidales - A New Order of Mushroom-Forming Fungi

(2014) Elisabet Sjökvist et al.   PLoS One

Phylogeny and Divergence Times of Gymnosperms Inferred from Single-Copy Nuclear Genes

(2014) Ying Lu et al.   PLoS One

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

Lepidostromatales, a new order of lichenized fungi (Basidiomycota, Agaricomycetes), with two new genera, Ertzia and Sulzbacheromyces, and one new species, Lepidostroma winklerianum

(2013) Brendan P. Hodkinson et al.   FUNGAL DIVERSITY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A new species of Lenzitopsis (Thelephorales, Basidiomycota) and its phylogenetic placement

(2012) Li-Wei Zhou et al.   MYCOSCIENCE

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Asynchronous origins of ectomycorrhizal clades of Agaricales

(2011) M. Ryberg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

(2011) D. C. Eastwood et al.   SCIENCE

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

EFFECTS OF GASTEROID FRUITING BODY MORPHOLOGY ON DIVERSIFICATION RATES IN THREE INDEPENDENT CLADES OF FUNGI ESTIMATED USING BINARY STATE SPECIATION AND EXTINCTION ANALYSIS

(2010) Andrew W. Wilson et al.   EVOLUTION

Convergent evolution of sequestrate forms in Amanita under Mediterranean climate conditions

(2010) Alfredo Justo et al.   MYCOLOGIA

Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms

(2010) Manfred Binder et al.   MYCOLOGIA

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

(2009) Leho Tedersoo et al.   MYCORRHIZA

Molecular phylogeny and spore evolution of Entolomataceae

(2009) D. Co-David et al.   PERSOONIA

Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis

(2009) Mark C. Brundrett   PLANT AND SOIL

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY