A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective

Towards standardizing taxonomic ranks using divergence times – a case study for reconstruction of the Agaricus taxonomic system

(2016) Rui-Lin Zhao et al.   FUNGAL DIVERSITY

Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa

(2016) Kevin D. Hyde et al.   FUNGAL DIVERSITY

Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa

(2016) Guo Jie Li et al.   FUNGAL DIVERSITY

Families of Sordariomycetes

(2016) Sajeewa S. N. Maharachchikumbura et al.   FUNGAL DIVERSITY

ExaML version 3: a tool for phylogenomic analyses on supercomputers

(2015) Alexey M. Kozlov et al.   BIOINFORMATICS

Halophily reloaded: new insights into the extremophilic life-style of Wallemia with the description of Wallemia hederae sp. nov

(2015) Sašo Jančič et al.   FUNGAL DIVERSITY

Lenormandins A—G, new azaphilones from Hypoxylon lenormandii and Hypoxylon jaklitschii sp. nov., recognised by chemotaxonomic data

(2015) Eric Kuhnert et al.   FUNGAL DIVERSITY

Towards a natural classification and backbone tree for Sordariomycetes

(2015) Sajeewa S. N. Maharachchikumbura et al.   FUNGAL DIVERSITY

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamics of the worldwide number of fungi with emphasis on fungal diversity in China

(2015) Yu-Cheng Dai et al.   MYCOLOGICAL PROGRESS

Multigene phylogeny and taxonomic revision of yeasts and related fungi in the Ustilaginomycotina

(2015) Q.-M. Wang et al.   STUDIES IN MYCOLOGY

Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses

(2015) Q.-M. Wang et al.   STUDIES IN MYCOLOGY

Phylogeny of tremellomycetous yeasts and related dimorphic and filamentous basidiomycetes reconstructed from multiple gene sequence analyses

(2015) X.-Z. Liu et al.   STUDIES IN MYCOLOGY

Towards an integrated phylogenetic classification of the Tremellomycetes

(2015) X.-Z. Liu et al.   STUDIES IN MYCOLOGY

Identification of a new order of root-colonising fungi in the Entorrhizomycota: Talbotiomycetales ord. nov. on eudicotyledons

(2015) Kai Riess et al.   IMA Fungus

Entorrhizomycota: A New Fungal Phylum Reveals New Perspectives on the Evolution of Fungi

(2015) Robert Bauer et al.   PLoS One

On Age and Species Richness of Higher Taxa

(2014) Tanja Stadler et al.   AMERICAN NATURALIST

Molecular phylogenetic analyses redefine seven major clades and reveal 22 new generic clades in the fungal family Boletaceae

(2014) Gang Wu et al.   FUNGAL DIVERSITY

One stop shop: backbones trees for important phytopathogenic genera: I (2014)

(2014) Kevin D. Hyde et al.   FUNGAL DIVERSITY

Palaeotropical origins, boreotropical distribution and increased rates of diversification in a clade of edible ectomycorrhizal mushrooms (AmanitasectionCaesareae)

(2014) Santiago Sánchez-Ramírez et al.   JOURNAL OF BIOGEOGRAPHY

Estimating the Phanerozoic history of the Ascomycota lineages: Combining fossil and molecular data

(2014) Christina Beimforde et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Moniliellomycetes and Malasseziomycetes, two new classes in Ustilaginomycotina

(2014) Q.-M. Wang et al.   PERSOONIA

Stereopsidales - A New Order of Mushroom-Forming Fungi

(2014) Elisabet Sjökvist et al.   PLoS One

Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent

(2013) Janja Zajc et al.   BMC GENOMICS

Bioactive metabolites from macrofungi: ethnopharmacology, biological activities and chemistry

(2013) Dilani D. De Silva et al.   FUNGAL DIVERSITY

Investigation and analysis of 102 mushroom poisoning cases in Southern China from 1994 to 2012

(2013) Zuohong Chen et al.   FUNGAL DIVERSITY

Lepidostromatales, a new order of lichenized fungi (Basidiomycota, Agaricomycetes), with two new genera, Ertzia and Sulzbacheromyces, and one new species, Lepidostroma winklerianum

(2013) Brendan P. Hodkinson et al.   FUNGAL DIVERSITY

Families of Dothideomycetes

(2013) Kevin D. Hyde et al.   FUNGAL DIVERSITY

Evolution of nutritional modes of Ceratobasidiaceae (Cantharellales, Basidiomycota) as revealed from publicly available ITS sequences

(2013) Vilmar Veldre et al.   Fungal Ecology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Concordance of seven gene genealogies compared to phenotypic data reveals multiple cryptic species in Australian dermocyboid Cortinarius (Agaricales)

(2013) Franck O.P. Stefani et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Combined molecular and morphological data for improving phylogenetic hypothesis in Dacrymycetes

(2013) Takashi Shirouzu et al.   MYCOLOGIA

Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi

(2012) Salvador Capella-Gutiérrez et al.   BMC BIOLOGY

Establishing criteria for higher-level classification using molecular data: the systematics ofPolyommatusblue butterflies (Lepidoptera, Lycaenidae)

(2012) Gerard Talavera et al.   CLADISTICS

Medicinal mushrooms in supportive cancer therapies: an approach to anti-cancer effects and putative mechanisms of action

(2012) Dilani D. De Silva et al.   FUNGAL DIVERSITY

Medicinal mushrooms in prevention and control of diabetes mellitus

(2012) Dilani D. De Silva et al.   FUNGAL DIVERSITY

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

(2012) Mahajabeen Padamsee et al.   FUNGAL GENETICS AND BIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

New species and distinctive geographical divergences of the genus Sparassis (Basidiomycota): evidence from morphological and molecular data

(2012) Qi Zhao et al.   MYCOLOGICAL PROGRESS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota)

(2012) Andrew W. Wilson et al.   NEW PHYTOLOGIST

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Evolutionary history of Serpulaceae (Basidiomycota): molecular phylogeny, historical biogeography and evidence for a single transition of nutritional mode

(2011) Inger Skrede et al.   BMC EVOLUTIONARY BIOLOGY

Rock-inhabiting fungi originated during periods of dry climate in the late Devonian and middle Triassic

(2011) Cécile Gueidan et al.   Fungal Biology

Major clades in tropical Agaricus

(2011) Ruilin Zhao et al.   FUNGAL DIVERSITY

Molecular techniques revolutionize knowledge of basidiomycete evolution

(2011) Zhu L. Yang   FUNGAL DIVERSITY

Reconstructing the Fungal Tree of Life Using Phylogenomics and a Preliminary Investigation of the Distribution of Yeast Prion-Like Proteins in the Fungal Kingdom

(2011) Edgar M. Medina et al.   JOURNAL OF MOLECULAR EVOLUTION

Farming termites determine the genetic population structure of Termitomyces fungal symbionts

(2011) TÂNIA NOBRE et al.   MOLECULAR ECOLOGY

A new lineage in Pucciniomycotina: class Tritirachiomycetes, order Tritirachiales, family Tritirachiaceae

(2011) Wiley A. Schell et al.   MYCOLOGIA

Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot

(2011) Ricardo Garcia-Sandoval et al.   MYCOLOGIA

Asynchronous origins of ectomycorrhizal clades of Agaricales

(2011) M. Ryberg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparative Dating of Attine Ant and Lepiotaceous Cultivar Phylogenies Reveals Coevolutionary Synchrony and Discord

(2010) Alexander S. Mikheyev et al.   AMERICAN NATURALIST

Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships

(2010) Kathryn E Bushley et al.   BMC EVOLUTIONARY BIOLOGY

Description of Holtermanniella gen. nov., including Holtermanniella takashimae sp. nov. and four new combinations, and proposal of the order Holtermanniales to accommodate tremellomycetous yeasts of the Holtermannia clade

(2010) M. Wuczkowski et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Molecular phylogenetics of porcini mushrooms (Boletus section Boletus)

(2010) Bryn T.M. Dentinger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms

(2010) Manfred Binder et al.   MYCOLOGIA

Dating the molecular clock in fungi – how close are we?

(2010) Mary L. Berbee et al.   Fungal Biology Reviews

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses

(2009) David S Hibbett et al.   BMC BIOLOGY

Species Diversity and Utilization of Medicinal Mushrooms and Fungi in China (Review)

(2009) Yu-Cheng Dai et al.   INTERNATIONAL JOURNAL OF MEDICINAL MUSHROOMS

Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae

(2009) P. Brandon Matheny et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Taxonomic study of the Japanese Dacrymycetes

(2009) T. Shirouzu et al.   PERSOONIA

Hidden diversity in the non‐caryophyllaceous plant‐parasitic members ofMicrobotryum(Pucciniomycotina: Microbotryales)

(2009) Martin Kemler et al.   SYSTEMATICS AND BIODIVERSITY

Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this

(2009) Francisco J. Ruiz-Dueñas et al.   Microbial Biotechnology

Septal pore complex morphology in the Agaricomycotina (Basidiomycota) with emphasis on the Cantharellales and Hymenochaetales

(2009) Kenneth G.A. van Driel et al.  

Plants and arbuscular mycorrhizal fungi: an evolutionary-developmental perspective

(2008) Paola Bonfante et al.   TRENDS IN PLANT SCIENCE