Chromatin topology and the timing of enhancer function at theHoxDlocus
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Chromatin topology and the timing of enhancer function at theHoxDlocus
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 117, Issue 49, Pages 31231-31241
Publisher
Proceedings of the National Academy of Sciences
Online
2020-11-24
DOI
10.1073/pnas.2015083117
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The regulatory landscapes of developmental genes
- (2020) Christopher Chase Bolt et al. DEVELOPMENT
- A complex regulatory landscape involved in the development of mammalian external genitals
- (2020) Ana Rita Amândio et al. eLife
- pyGenomeTracks: reproducible plots for multivariate genomic data sets
- (2020) Lucille Lopez-Delisle et al. BIOINFORMATICS
- Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations
- (2019) Katerina Kraft et al. NATURE CELL BIOLOGY
- The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist
- (2019) Joke G. van Bemmel et al. NATURE GENETICS
- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
- (2019) Jeffrey M Alexander et al. eLife
- Impact of genome architecture on the functional activation and repression of Hox regulatory landscapes
- (2019) Eddie Rodríguez-Carballo et al. BMC BIOLOGY
- Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
- (2019) Alexandra Despang et al. NATURE GENETICS
- Preformed chromatin topology assists transcriptional robustness of Shh during limb development
- (2019) Christina Paliou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Developmentally regulated Shh expression is robust to TAD perturbations
- (2019) Iain Williamson et al. DEVELOPMENT
- Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
- (2019) Nezha S. Benabdallah et al. MOLECULAR CELL
- peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data
- (2018) Geert Geeven et al. NUCLEIC ACIDS RESEARCH
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
- (2018) Enis Afgan et al. NUCLEIC ACIDS RESEARCH
- 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data
- (2018) Ibai Irastorza-Azcarate et al. PLoS Computational Biology
- Enhancer redundancy provides phenotypic robustness in mammalian development
- (2018) Marco Osterwalder et al. NATURE
- Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
- (2018) Sergi Cuartero et al. NATURE IMMUNOLOGY
- Similarities and differences in the regulation of HoxD genes during chick and mouse limb development
- (2018) Nayuta Yakushiji-Kaminatsui et al. PLOS BIOLOGY
- TheHoxDcluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes
- (2017) Eddie Rodríguez-Carballo et al. GENES & DEVELOPMENT
- Two independent modes of chromatin organization revealed by cohesin removal
- (2017) Wibke Schwarzer et al. NATURE
- Tissue-specific CTCF–cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo
- (2017) Lars L. P. Hanssen et al. NATURE CELL BIOLOGY
- Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog)
- (2017) Anja J Will et al. NATURE GENETICS
- The Conserved Sonic Hedgehog Limb Enhancer Consists of Discrete Functional Elements that Regulate Precise Spatial Expression
- (2017) Laura A. Lettice et al. Cell Reports
- Enhancer Control of Transcriptional Bursting
- (2016) Takashi Fukaya et al. CELL
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
- (2016) Orsolya Symmons et al. DEVELOPMENTAL CELL
- A role for HOX13 proteins in the regulatory switch between TADs at theHoxDlocus
- (2016) Leonardo Beccari et al. GENES & DEVELOPMENT
- Formation of new chromatin domains determines pathogenicity of genomic duplications
- (2016) Martin Franke et al. NATURE
- Control ofHoxdgene transcription in the mammary bud by hijacking a preexisting regulatory landscape
- (2016) Ruben Schep et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- A mathematical model explains saturating axon guidance responses to molecular gradients
- (2016) Huyen Nguyen et al. eLife
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
- (2015) Ya Guo et al. CELL
- CTCF Binding Polarity Determines Chromatin Looping
- (2015) Elzo de Wit et al. MOLECULAR CELL
- ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
- (2015) Christian Schmidl et al. NATURE METHODS
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
- (2014) Fabrice P. A. David et al. PLoS One
- Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci
- (2014) N. Lonfat et al. SCIENCE
- A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
- (2013) G. Andrey et al. SCIENCE
- Multiple Enhancers Regulate Hoxd Genes and the Hotdog LncRNA during Cecum Budding
- (2013) Saskia Delpretti et al. Cell Reports
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- A Genetic Approach to the Transcriptional Regulation of Hox Gene Clusters
- (2011) Patrick Tschopp et al. Annual Review of Genetics
- A Regulatory Archipelago Controls Hox Genes Transcription in Digits
- (2011) Thomas Montavon et al. CELL
- Functional Analysis of CTCF During Mammalian Limb Development
- (2010) Natalia Soshnikova et al. DEVELOPMENTAL CELL
- A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings
- (2009) T. Sagai et al. DEVELOPMENT
- Axial patterning in snakes and caecilians: Evidence for an alternative interpretation of the Hox code
- (2009) Joost M. Woltering et al. DEVELOPMENTAL BIOLOGY
- Modeling Hox gene regulation in digits: reverse collinearity and the molecular origin of thumbness
- (2008) T. Montavon et al. GENES & DEVELOPMENT
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started