A complex regulatory landscape involved in the development of mammalian external genitals
Published 2020 View Full Article
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Title
A complex regulatory landscape involved in the development of mammalian external genitals
Authors
Keywords
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Journal
eLife
Volume 9, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2020-04-17
DOI
10.7554/elife.52962
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Note: Only part of the references are listed.- Preformed chromatin topology assists transcriptional robustness of Shh during limb development
- (2019) Christina Paliou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The constrained architecture of mammalian Hox gene clusters
- (2019) Fabrice Darbellay et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Improved CUT&RUN chromatin profiling tools
- (2019) Michael P Meers et al. eLife
- Developmentally regulated Shh expression is robust to TAD perturbations
- (2019) Iain Williamson et al. DEVELOPMENT
- Immediate and deferred epigenomic signatures of in vivo neuronal activation in mouse hippocampus
- (2019) Jordi Fernandez-Albert et al. NATURE NEUROSCIENCE
- Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
- (2018) Ralph Stadhouders et al. NATURE GENETICS
- Targeted in situ genome-wide profiling with high efficiency for low cell numbers
- (2018) Peter J Skene et al. Nature Protocols
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- The Energetics and Physiological Impact of Cohesin Extrusion
- (2018) Laura Vian et al. CELL
- Enhancer redundancy provides phenotypic robustness in mammalian development
- (2018) Marco Osterwalder et al. NATURE
- Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains
- (2018) Ann Boija et al. CELL
- TheHoxDcluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes
- (2017) Eddie Rodríguez-Carballo et al. GENES & DEVELOPMENT
- An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites
- (2017) Peter J Skene et al. eLife
- Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
- (2017) Paula Freire-Pritchett et al. eLife
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- A role for HOX13 proteins in the regulatory switch between TADs at theHoxDlocus
- (2016) Leonardo Beccari et al. GENES & DEVELOPMENT
- Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
- (2016) Guillaume Andrey et al. GENOME RESEARCH
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
- (2016) Enis Afgan et al. NUCLEIC ACIDS RESEARCH
- Distal Limb Patterning Requires Modulation of cis -Regulatory Activities by HOX13
- (2016) Rushikesh Sheth et al. Cell Reports
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- Hotair Is Dispensible for Mouse Development
- (2016) Ana Rita Amândio et al. PLoS Genetics
- An illustrated anatomical ontology of the developing mouse lower urogenital tract
- (2015) K. M. Georgas et al. DEVELOPMENT
- Shared Enhancer Activity in the Limbs and Phallus and Functional Divergence of a Limb-Genital cis-Regulatory Element in Snakes
- (2015) Carlos R. Infante et al. DEVELOPMENTAL CELL
- Structure, function and evolution of topologically associating domains (TADs) atHOXloci
- (2015) Nicolas Lonfat et al. FEBS LETTERS
- CTCF Binding Polarity Determines Chromatin Looping
- (2015) Elzo de Wit et al. MOLECULAR CELL
- Ensembl 2016
- (2015) Andrew Yates et al. NUCLEIC ACIDS RESEARCH
- Clustering of mammalianHoxgenes with other H3K27me3 targets within an active nuclear domain
- (2015) Maxence Vieux-Rochas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
- (2015) Matteo Vietri Rudan et al. Cell Reports
- CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool
- (2015) Manuel Stemmer et al. PLoS One
- Electroporation enables the efficient mRNA delivery into the mouse zygotes and facilitates CRISPR/Cas9-based genome editing
- (2015) Masakazu Hashimoto et al. Scientific Reports
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- A relative shift in cloacal location repositions external genitalia in amniote evolution
- (2014) Patrick Tschopp et al. NATURE
- CTCF: an architectural protein bridging genome topology and function
- (2014) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
- (2014) Fabrice P. A. David et al. PLoS One
- Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci
- (2014) N. Lonfat et al. SCIENCE
- Conservation and Divergence of Regulatory Strategies at Hox Loci and the Origin of Tetrapod Digits
- (2014) Joost M. Woltering et al. PLOS BIOLOGY
- Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci
- (2014) Daan Noordermeer et al. eLife
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
- (2013) G. Andrey et al. SCIENCE
- Multiplex Genome Engineering Using CRISPR/Cas Systems
- (2013) L. Cong et al. SCIENCE
- Generation of mutant mice by pronuclear injection of circular plasmid expressing Cas9 and single guided RNA
- (2013) Daisuke Mashiko et al. Scientific Reports
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
- (2012) Wulan Deng et al. CELL
- Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels
- (2012) Masato Kato et al. CELL
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization
- (2012) Jesse D. Ziebarth et al. NUCLEIC ACIDS RESEARCH
- A Regulatory Archipelago Controls Hox Genes Transcription in Digits
- (2011) Thomas Montavon et al. CELL
- Development of the external genitalia: Conserved and divergent mechanisms of appendage patterning
- (2011) Martin J. Cohn DEVELOPMENTAL DYNAMICS
- The Dynamic Architecture of Hox Gene Clusters
- (2011) D. Noordermeer et al. SCIENCE
- Improving RNA-Seq expression estimates by correcting for fragment bias
- (2011) Adam Roberts et al. GENOME BIOLOGY
- A regulatory ‘landscape effect’ over the HoxD cluster
- (2010) Patrick Tschopp et al. DEVELOPMENTAL BIOLOGY
- Functional Analysis of CTCF During Mammalian Limb Development
- (2010) Natalia Soshnikova et al. DEVELOPMENTAL CELL
- Homeobox genes d11–d13 and a13 control mouse autopod cortical bone and joint formation
- (2010) Pablo Villavicencio-Lorini et al. JOURNAL OF CLINICAL INVESTIGATION
- Phenotypic robustness conferred by apparently redundant transcriptional enhancers
- (2010) Nicolás Frankel et al. NATURE
- Cdx and Hox Genes Differentially Regulate Posterior Axial Growth in Mammalian Embryos
- (2009) Teddy Young et al. DEVELOPMENTAL CELL
- Regulatory divergence modifies limb length between mammals
- (2008) C. J. Cretekos et al. GENES & DEVELOPMENT
- Modeling Hox gene regulation in digits: reverse collinearity and the molecular origin of thumbness
- (2008) T. Montavon et al. GENES & DEVELOPMENT
- Shadow Enhancers as a Source of Evolutionary Novelty
- (2008) J.-W. Hong et al. SCIENCE
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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