Chromatin regulatory dynamics of early human small intestinal development using a directed differentiation model
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Chromatin regulatory dynamics of early human small intestinal development using a directed differentiation model
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 49, Issue 2, Pages 726-744
Publisher
Oxford University Press (OUP)
Online
2020-12-02
DOI
10.1093/nar/gkaa1204
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr+ Progenitors
- (2020) Daisong Wang et al. CELL
- Hotspots of Aberrant Enhancer Activity in Fibrolamellar Carcinoma Reveal Candidate Oncogenic Pathways and Therapeutic Vulnerabilities
- (2020) Timothy A. Dinh et al. Cell Reports
- Differentiation of Human Intestinal Organoids with Endogenous Vascular Endothelial Cells
- (2020) Emily M. Holloway et al. DEVELOPMENTAL CELL
- Dysregulation of miR-431 and target gene FOXA1 in intestinal tissues of infants with necrotizing enterocolitis
- (2019) Yu Zheng Wu et al. FASEB JOURNAL
- The lineage-specific transcription factor CDX2 navigates dynamic chromatin to control distinct stages of intestine development
- (2019) Namit Kumar et al. DEVELOPMENT
- The emergent landscape of the mouse gut endoderm at single-cell resolution
- (2019) Sonja Nowotschin et al. NATURE
- A reinforcing HNF4–SMAD4 feed-forward module stabilizes enterocyte identity
- (2019) Lei Chen et al. NATURE GENETICS
- Noncoding deletions reveal a gene that is critical for intestinal function
- (2019) Danit Oz-Levi et al. NATURE
- Gene expression across mammalian organ development
- (2019) Margarida Cardoso-Moreira et al. NATURE
- A compendium of promoter-centered long-range chromatin interactions in the human genome
- (2019) Inkyung Jung et al. NATURE GENETICS
- Identification, isolation and characterization of human LGR5-positive colon adenoma cells
- (2018) Michael K. Dame et al. DEVELOPMENT
- Patterning the gastrointestinal epithelium to confer regional-specific functions
- (2018) Cayla A. Thompson et al. DEVELOPMENTAL BIOLOGY
- Integrating single-cell transcriptomic data across different conditions, technologies, and species
- (2018) Andrew Butler et al. NATURE BIOTECHNOLOGY
- Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing
- (2018) Shuai Gao et al. NATURE CELL BIOLOGY
- Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies
- (2018) Mette Boyd et al. Nature Communications
- Identification and Single-Cell Functional Characterization of an Endodermally Biased Pluripotent Substate in Human Embryonic Stem Cells
- (2018) Thomas F. Allison et al. Stem Cell Reports
- Enhancer, transcriptional, and cell fate plasticity precedes intestinal determination during endoderm development
- (2018) Kushal K. Banerjee et al. GENES & DEVELOPMENT
- Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme
- (2018) Tinyi Chu et al. NATURE GENETICS
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium
- (2017) David R Hill et al. eLife
- GATA6 Plays an Important Role in the Induction of Human Definitive Endoderm, Development of the Pancreas, and Functionality of Pancreatic β Cells
- (2017) Amita Tiyaboonchai et al. Stem Cell Reports
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- In vitropatterning of pluripotent stem cell-derived intestine recapitulatesin vivohuman development
- (2016) Yu-Hwai Tsai et al. DEVELOPMENT
- Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
- (2016) Dig Bijay Mahat et al. Nature Protocols
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
- (2016) Maxim V. Kuleshov et al. NUCLEIC ACIDS RESEARCH
- Sp5 and Sp8 recruit β-catenin and Tcf1-Lef1 to select enhancers to activate Wnt target gene transcription
- (2016) Mark W. Kennedy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
- (2016) Anthony D. Schmitt et al. Cell Reports
- Axud1 Integrates Wnt Signaling and Transcriptional Inputs to Drive Neural Crest Formation
- (2015) Marcos Simões-Costa et al. DEVELOPMENTAL CELL
- Generating human intestinal tissues from pluripotent stem cells to study development and disease
- (2015) K. L. Sinagoga et al. EMBO JOURNAL
- Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids
- (2015) S. R. Finkbeiner et al. Biology Open
- Transcriptome-wide Analysis Reveals Hallmarks of Human Intestine Development and Maturation In Vitro and In Vivo
- (2015) Stacy R. Finkbeiner et al. Stem Cell Reports
- How to make an intestine
- (2014) J. M. Wells et al. DEVELOPMENT
- Chromatin remodeling mediated by the FOXA1/A2 transcription factors activatesCFTRexpression in intestinal epithelial cells
- (2014) Jenny L Kerschner et al. Epigenetics
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- An in vivo model of human small intestine using pluripotent stem cells
- (2014) Carey L Watson et al. NATURE MEDICINE
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian Development
- (2013) Alex S. Nord et al. CELL
- Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
- (2013) Wei Xie et al. CELL
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Transcriptional Networks in Liver and Intestinal Development
- (2012) K. L. Sheaffer et al. Cold Spring Harbor Perspectives in Biology
- Generating human intestinal tissue from pluripotent stem cells in vitro
- (2011) Kyle W McCracken et al. Nature Protocols
- Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
- (2011) Frederic Koch et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- CDX2 autoregulation in human intestinal metaplasia of the stomach: impact on the stability of the phenotype
- (2010) R. Barros et al. GUT
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Widespread transcription at neuronal activity-regulated enhancers
- (2010) Tae-Kyung Kim et al. NATURE
- Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro
- (2010) Jason R. Spence et al. NATURE
- TCF4 and CDX2, major transcription factors for intestinal function, converge on the same cis-regulatory regions
- (2010) M. P. Verzi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Establishment of Intestinal Identity and Epithelial-Mesenchymal Signaling by Cdx2
- (2009) Nan Gao et al. DEVELOPMENTAL CELL
- Foxa1 and Foxa2 Control the Differentiation of Goblet and Enteroendocrine L- and D-Cells in Mice
- (2009) Diana Z. Ye et al. GASTROENTEROLOGY
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Sfrp Controls Apicobasal Polarity and Oriented Cell Division in Developing Gut Epithelium
- (2009) Makoto Matsuyama et al. PLoS Genetics
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now