Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior

Zebrafish Retinal Ganglion Cells Asymmetrically Encode Spectral and Temporal Information across Visual Space

(2020) Mingyi Zhou et al.   CURRENT BIOLOGY

Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders

(2020) David Zhang et al.   Science Advances

An Optical Illusion Pinpoints an Essential Circuit Node for Global Motion Processing

(2020) Yunmin Wu et al.   NEURON

Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey

(2020) Dominique Förster et al.   eLife

Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data

(2019) George C. Linderman et al.   NATURE METHODS

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

(2019) Yi-Rong Peng et al.   CELL

A Cellular-Resolution Atlas of the Larval Zebrafish Brain

(2019) Michael Kunst et al.   NEURON

Neuronal Architecture of a Visual Center that Processes Optic Flow

(2019) Anna Kramer et al.   NEURON

Melanopsin and the Intrinsically Photosensitive Retinal Ganglion Cells: Biophysics to Behavior

(2019) Michael Tri H. Do   NEURON

Deconstructing Hunting Behavior Reveals a Tightly Coupled Stimulus-Response Loop

(2019) Duncan S. Mearns et al.   CURRENT BIOLOGY

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes

(2019) Nicholas M. Tran et al.   NEURON

Circadian regulation of phosphodiesterase 6 genes in zebrafish differs between cones and rods: Implications for photopic and scotopic vision

(2019) Xesús M. Abalo et al.   VISION RESEARCH

Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology

(2018) J. Alexander Bae et al.   CELL

Zebrafish Differentially Process Color across Visual Space to Match Natural Scenes

(2018) Maxime J.Y. Zimmermann et al.   CURRENT BIOLOGY

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

(2018) Shristi Pandey et al.   CURRENT BIOLOGY

Tbr1 instructs laminar patterning of retinal ganglion cell dendrites

(2018) Jinyue Liu et al.   NATURE NEUROSCIENCE

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes

(2018) Bruce A. Rheaume et al.   Nature Communications

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Cadherin Combinations Recruit Dendrites of Distinct Retinal Neurons to a Shared Interneuronal Scaffold

(2018) Xin Duan et al.   NEURON

Biological Motion as an Innate Perceptual Mechanism Driving Social Affiliation

(2018) Johannes Larsch et al.   CURRENT BIOLOGY

Topography of a Visuomotor Transformation

(2018) Thomas O. Helmbrecht et al.   NEURON

Function first: classifying cell types and circuits of the retina

(2018) Anna L Vlasits et al.   CURRENT OPINION IN NEUROBIOLOGY

Inhibition decorrelates visual feature representations in the inner retina

(2017) Katrin Franke et al.   NATURE

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell

(2017) Yi-Rong Peng et al.   NEURON

Left Habenula Mediates Light-Preference Behavior in Zebrafish via an Asymmetrical Visual Pathway

(2017) Bai-bing Zhang et al.   NEURON

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

Diverse Central Projection Patterns of Retinal Ganglion Cells

(2017) Emily M. Martersteck et al.   Cell Reports

The Human Cell Atlas

(2017) Aviv Regev et al.   eLife

Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools

(2017) Dominique Förster et al.   Scientific Reports

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

(2016) Karthik Shekhar et al.   CELL

The Cellular Organization of Zebrafish Visuomotor Circuits

(2016) Michael B. Orger   CURRENT BIOLOGY

The functional diversity of retinal ganglion cells in the mouse

(2016) Tom Baden et al.   NATURE

In vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration

(2016) Keiichiro Suzuki et al.   NATURE

Two Pairs of ON and OFF Retinal Ganglion Cells Are Defined by Intersectional Patterns of Transcription Factor Expression

(2016) David L. Rousso et al.   Cell Reports

The Types of Retinal Ganglion Cells: Current Status and Implications for Neuronal Classification

(2015) Joshua R. Sanes et al.   Annual Review of Neuroscience

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish

(2015) Incinur Temizer et al.   CURRENT BIOLOGY

Topographic wiring of the retinotectal connection in zebrafish

(2015) Elizabeth M. Kita et al.   Developmental Neurobiology

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping

(2015) Jennifer B Treweek et al.   Nature Protocols

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies

(2015) Gregory D. Marquart et al.   Frontiers in Neural Circuits

Bonsai: an event-based framework for processing and controlling data streams

(2015) Gonçalo Lopes et al.   Frontiers in Neuroinformatics

Contributions of Retinal Ganglion Cells to Subcortical Visual Processing and Behaviors

(2015) Onkar S. Dhande et al.   Annual Review of Vision Science

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool

(2015) Manuel Stemmer et al.   PLoS One

Type II Cadherins Guide Assembly of a Direction-Selective Retinal Circuit

(2014) Xin Duan et al.   CELL

The Retinal Projectome Reveals Brain-Area-Specific Visual Representations Generated by Ganglion Cell Diversity

(2014) Estuardo Robles et al.   CURRENT BIOLOGY

TUBB5 and its disease-associated mutations influence the terminal differentiation and dendritic spine densities of cerebral cortical neurons

(2014) Linh Ngo et al.   HUMAN MOLECULAR GENETICS

Direct activation of the Mauthner cell by electric field pulses drives ultrarapid escape responses

(2014) Kathryn M. Tabor et al.   JOURNAL OF NEUROPHYSIOLOGY

T-box Transcription Regulator Tbr2 Is Essential for the Formation and Maintenance of Opn4/Melanopsin-Expressing Intrinsically Photosensitive Retinal Ganglion Cells

(2014) C.-A. Mao et al.   JOURNAL OF NEUROSCIENCE

Tbr2 Is Required to Generate a Neural Circuit Mediating the Pupillary Light Reflex

(2014) N. T. Sweeney et al.   JOURNAL OF NEUROSCIENCE

Descending Control of Swim Posture by a Midbrain Nucleus in Zebrafish

(2014) Tod R. Thiele et al.   NEURON

A dedicated visual pathway for prey detection in larval zebrafish

(2014) Julia L Semmelhack et al.   eLife

Precise Lamination of Retinal Axons Generates Multiple Parallel Input Pathways in the Tectum

(2013) E. Robles et al.   JOURNAL OF NEUROSCIENCE

RNA-Binding Protein Hermes/RBPMS Inversely Affects Synapse Density and Axon Arbor Formation in Retinal Ganglion Cells In Vivo

(2013) H. Hornberg et al.   JOURNAL OF NEUROSCIENCE

Genetic Dissection of Retinal Inputs to Brainstem Nuclei Controlling Image Stabilization

(2013) O. S. Dhande et al.   JOURNAL OF NEUROSCIENCE

Proteoglycan-Mediated Axon Degeneration Corrects Pretarget Topographic Sorting Errors

(2013) Fabienne E. Poulain et al.   NEURON

The Neuron Identity Problem: Form Meets Function

(2013) Gord Fishell et al.   NEURON

Golden GATEway Cloning – A Combinatorial Approach to Generate Fusion and Recombination Constructs

(2013) Stephan Kirchmaier et al.   PLoS One

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Parametric Functional Maps of Visual Inputs to the Tectum

(2012) Nikolas Nikolaou et al.   NEURON

Layer-Specific Targeting of Direction-Selective Neurons in the Zebrafish Optic Tectum

(2012) Jens P. Gabriel et al.   NEURON

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics

(2012) Douglas G. Howe et al.   NUCLEIC ACIDS RESEARCH

Gal80 intersectional regulation of cell-type specific expression in vertebrates

(2011) Esther Fujimoto et al.   DEVELOPMENTAL DYNAMICS

Photoentrainment and pupillary light reflex are mediated by distinct populations of ipRGCs

(2011) S.-K. Chen et al.   NATURE

Transposon-mediated BAC transgenesis in zebrafish

(2011) Maximiliano L Suster et al.   Nature Protocols

Unexpected Diversity and Photoperiod Dependence of the Zebrafish Melanopsin System

(2011) Vanessa Matos-Cruz et al.   PLoS One

Intrinsically photosensitive retinal ganglion cells: many subtypes, diverse functions

(2011) Tiffany M. Schmidt et al.   TRENDS IN NEUROSCIENCES

Design Principles of Insect and Vertebrate Visual Systems

(2010) Joshua R. Sanes et al.   NEURON

The neural basis of visual behaviors in the larval zebrafish

(2009) Ruben Portugues et al.   CURRENT OPINION IN NEUROBIOLOGY

Genetic and optical targeting of neural circuits and behavior—zebrafish in the spotlight

(2009) Herwig Baier et al.   CURRENT OPINION IN NEUROBIOLOGY

Vsx2 in the zebrafish retina: restricted lineages through derepression

(2009) Marta Vitorino et al.   Neural Development

Optical control of zebrafish behavior with halorhodopsin

(2009) A. B. Arrenberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pathfinding in a large vertebrate axon tract: isotypic interactions guide retinotectal axons at multiple choice points

(2008) A. J. Pittman et al.   DEVELOPMENT

Zebrafish neurolin-a and -b, orthologs of ALCAM, are involved in retinal ganglion cell differentiation and retinal axon pathfinding

(2008) Heike Diekmann et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Nitroreductase-mediated cell/tissue ablation in zebrafish: a spatially and temporally controlled ablation method with applications in developmental and regeneration studies

(2008) Silvia Curado et al.   Nature Protocols