Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process
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Title
Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-12-20
DOI
10.1111/mec.15777
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Note: Only part of the references are listed.- Factors influencing aquatic and terrestrial bacterial community assembly
- (2019) Silke Langenheder et al. Environmental Microbiology Reports
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- (2019) Huili Feng et al. Forests
- A general framework for quantitatively assessing ecological stochasticity
- (2019) Daliang Ning et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2018) Yuqian Tang et al. APPLIED SOIL ECOLOGY
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- (2018) Kyle M. Meyer et al. ISME Journal
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- (2018) Yu Shi et al. Microbiome
- Spatial scaling of forest soil microbial communities across a temperature gradient
- (2018) Ye Deng et al. ENVIRONMENTAL MICROBIOLOGY
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- (2018) Ashley Shade et al. TRENDS IN ECOLOGY & EVOLUTION
- Climate warming leads to divergent succession of grassland microbial communities
- (2018) Xue Guo et al. Nature Climate Change
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- (2018) Shuo Jiao et al. Microbiome
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- (2017) Jingyi Ru et al. GLOBAL CHANGE BIOLOGY
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- (2017) Xiao-Bo Wang et al. ISME Journal
- Where less may be more: how the rare biosphere pulls ecosystems strings
- (2017) Alexandre Jousset et al. ISME Journal
- Biodiversity and species competition regulate the resilience of microbial biofilm community
- (2017) Kai Feng et al. MOLECULAR ECOLOGY
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
- Embracing the unknown: disentangling the complexities of the soil microbiome
- (2017) Noah Fierer NATURE REVIEWS MICROBIOLOGY
- Not poles apart: Antarctic soil fungal communities show similarities to those of the distant Arctic
- (2016) Filipa Cox et al. ECOLOGY LETTERS
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- (2016) Haiyan Chu et al. ENVIRONMENTAL MICROBIOLOGY
- Spatial scale drives patterns in soil bacterial diversity
- (2016) Sarah L. O'Brien et al. ENVIRONMENTAL MICROBIOLOGY
- Experimental warming reveals positive feedbacks to climate change in the Eurasian Steppe
- (2016) Ximei Zhang et al. ISME Journal
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- (2016) Sarah Evans et al. ISME Journal
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- (2015) Zachary Freedman et al. ENVIRONMENTAL MICROBIOLOGY
- Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities
- (2015) Ye Deng et al. GLOBAL CHANGE BIOLOGY
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- (2015) Gary G. Mittelbach et al. TRENDS IN ECOLOGY & EVOLUTION
- Over 150 Years of Long-Term Fertilization Alters Spatial Scaling of Microbial Biodiversity
- (2015) Yuting Liang et al. mBio
- Deterministic processes vary during community assembly for ecologically dissimilar taxa
- (2015) Jeff R. Powell et al. Nature Communications
- Scale dependency in the functional form of the distance decay relationship
- (2014) Jeffrey C. Nekola et al. ECOGRAPHY
- Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
- (2014) Jie Deng et al. MOLECULAR ECOLOGY
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
- (2014) Jizhong Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Endemism and functional convergence across the North American soil mycobiome
- (2014) J. M. Talbot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Changes in extracellular enzyme activity and microbial community structure with soil depth at the Luquillo Critical Zone Observatory
- (2014) M.M. Stone et al. SOIL BIOLOGY & BIOCHEMISTRY
- The counteractive effects of nitrogen addition and watering on soil bacterial communities in a steppe ecosystem
- (2014) Ximei Zhang et al. SOIL BIOLOGY & BIOCHEMISTRY
- Global drivers and patterns of microbial abundance in soil
- (2013) Hector M. Serna-Chavez et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances
- (2013) Rachel I Adams et al. ISME Journal
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- (2013) James C Stegen et al. ISME Journal
- Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
- (2013) Jianjun Wang et al. ISME Journal
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- (2013) D. R. Nemergut et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Temporal variation in surface and subsoil abundance and function of the soil microbial community in an arable soil
- (2013) Susanne Kramer et al. SOIL BIOLOGY & BIOCHEMISTRY
- Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community
- (2013) J. Zhou et al. mBio
- Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity
- (2013) L. Ranjard et al. Nature Communications
- Stochastic and deterministic assembly processes in subsurface microbial communities
- (2012) James C Stegen et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
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- (2012) China A. Hanson et al. NATURE REVIEWS MICROBIOLOGY
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- (2012) Kathryn G. Eilers et al. SOIL BIOLOGY & BIOCHEMISTRY
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- (2011) T. Magoc et al. BIOINFORMATICS
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- (2011) J. M. Chase et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Drivers of bacterial -diversity depend on spatial scale
- (2011) J. B. H. Martiny et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2011) Karel Prach et al. TRENDS IN ECOLOGY & EVOLUTION
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- (2011) Jonathan M. Chase et al. Ecosphere
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- (2010) S. W. Kembel et al. BIOINFORMATICS
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- (2010) I. D. Ofiteru et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Conceptual Synthesis in Community Ecology
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- Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments
- (2010) J. M. Chase SCIENCE
- PyNAST: a flexible tool for aligning sequences to a template alignment
- (2009) J. G. Caporaso et al. BIOINFORMATICS
- Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands
- (2009) Martin Hartmann et al. ENVIRONMENTAL MICROBIOLOGY
- Relative roles of niche and neutral processes in structuring a soil microbial community
- (2009) Alex J Dumbrell et al. ISME Journal
- Which function describes the species-area relationship best? A review and empirical evaluation
- (2009) Jürgen Dengler JOURNAL OF BIOGEOGRAPHY
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Predominant role of water in regulating soil and microbial respiration and their responses to climate change in a semiarid grassland
- (2008) WEIXING LIU et al. GLOBAL CHANGE BIOLOGY
- Spatial scaling of functional gene diversity across various microbial taxa
- (2008) J. Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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