Describing the current status of Plasmodium falciparum population structure and drug resistance within mainland Tanzania using molecular inversion probes

Antimalarial drug resistance profiling of Plasmodium falciparum infections in Ghana using molecular inversion probes and next generation sequencing.

(2020) Benedicta A. Mensah et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Detection of mutations associated with artemisinin resistance at k13-propeller gene and a near complete return of chloroquine susceptible falciparum malaria in Southeast of Tanzania

(2020) George M. Bwire et al.   Scientific Reports

Sub-national stratification of malaria risk in mainland Tanzania: a simplified assembly of survey and routine data

(2020) Sumaiyya G. Thawer et al.   MALARIA JOURNAL

The impact of antimalarial resistance on the genetic structure of Plasmodium falciparum in the DRC

(2020) Robert Verity et al.   Nature Communications

Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda

(2020) Aline Uwimana et al.   NATURE MEDICINE

Describing the current status of Plasmodium falciparum population structure and drug resistance within mainland Tanzania using molecular inversion probes

(2020) Kara A. Moser et al.   MOLECULAR ECOLOGY

High cure rates and tolerability of artesunate–amodiaquine and dihydroartemisinin–piperaquine for the treatment of uncomplicated falciparum malaria in Kibaha and Kigoma, Tanzania

(2019) Celine I. Mandara et al.   MALARIA JOURNAL

Use cases for genetic epidemiology in malaria elimination

(2019) Ronit Dalmat et al.   MALARIA JOURNAL

Using parasite genetic and human mobility data to infer local and cross-border malaria connectivity in Southern Africa

(2019) Sofonias Tessema et al.   eLife

Mapping imported malaria in Bangladesh using parasite genetic and human mobility data

(2019) Hsiao-Han Chang et al.   eLife

Evolution and expansion of multidrug-resistant malaria in southeast Asia: a genomic epidemiology study

(2019) William L Hamilton et al.   LANCET INFECTIOUS DISEASES

Human mobility patterns and malaria importation on Bioko Island

(2019) Carlos A. Guerra et al.   Nature Communications

Applying next-generation sequencing to track falciparum malaria in sub-Saharan Africa

(2019) Sofonias K. Tessema et al.   MALARIA JOURNAL

Major subpopulations of Plasmodium falciparum in sub-Saharan Africa

(2019) Alfred Amambua-Ngwa et al.   SCIENCE

The changing landscape of Plasmodium falciparum drug resistance in the Democratic Republic of Congo

(2019) Molly Deutsch-Feldman et al.   BMC INFECTIOUS DISEASES

Windborne long-distance migration of malaria mosquitoes in the Sahel

(2019) Diana L. Huestis et al.   NATURE

Assessing the interplay between human mobility and mosquito borne diseases in urban environments

(2019) Emanuele Massaro et al.   Scientific Reports

Dramatic Changes in Malaria Population Genetic Complexity in Dielmo and Ndiop, Senegal, Revealed Using Genomic Surveillance

(2018) Amy K Bei et al.   JOURNAL OF INFECTIOUS DISEASES

Drug-Resistance and Population Structure of Plasmodium falciparum Across the Democratic Republic of Congo Using High-Throughput Molecular Inversion Probes

(2018) Ozkan Aydemir et al.   JOURNAL OF INFECTIOUS DISEASES

Origins of the current outbreak of multidrug-resistant malaria in southeast Asia: a retrospective genetic study

(2018) Roberto Amato et al.   LANCET INFECTIOUS DISEASES

Consistent signatures of selection from genomic analysis of pairs of temporal and spatial Plasmodium falciparum populations from The Gambia

(2018) Alfred Amambua-Ngwa et al.   Scientific Reports

Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development

(2018) Craig W. Duffy et al.   Scientific Reports

Multiplicity of infection is a poor predictor of village-level Plasmodium vivax and P. falciparum population prevalence in the Southwest Pacific

(2018) Cristian Koepfli et al.   Open Forum Infectious Diseases

Nationwide school malaria parasitaemia survey in public primary schools, the United Republic of Tanzania

(2018) Frank Chacky et al.   MALARIA JOURNAL

Surveillance for sulfadoxine-pyrimethamine resistant malaria parasites in the Lake and Southern Zones, Tanzania, using pooling and next-generation sequencing

(2017) Jeremiah M. Ngondi et al.   MALARIA JOURNAL

SeekDeep: single-base resolution de novo clustering for amplicon deep sequencing

(2017) Nicholas J Hathaway et al.   NUCLEIC ACIDS RESEARCH

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites

(2017) Hsiao-Han Chang et al.   PLoS Computational Biology

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent

(2017) Aimee R. Taylor et al.   PLoS Genetics

Molecular monitoring of Plasmodium falciparum super-resistance to sulfadoxine–pyrimethamine in Tanzania

(2016) Reginald A. Kavishe et al.   MALARIA JOURNAL

Characterizing the impact of sustained sulfadoxine/pyrimethamine use upon the Plasmodium falciparum population in Malawi

(2016) Matt Ravenhall et al.   MALARIA JOURNAL

The hitchhiker's guide to becoming invasive: exotic mosquitoes spread across a US state by human transport not autonomous flight

(2016) Andrea Egizi et al.   MOLECULAR ECOLOGY

Modeling malaria genomics reveals transmission decline and rebound in Senegal

(2015) Rachel F. Daniels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia

(2014) Shannon Takala-Harrison et al.   JOURNAL OF INFECTIOUS DISEASES

Whole-Genome Scans Provide Evidence of Adaptive Evolution in Malawian Plasmodium falciparum Isolates

(2014) Harold Ocholla et al.   JOURNAL OF INFECTIOUS DISEASES

Selection for chloroquine-sensitive Plasmodium falciparum by wild Anopheles arabiensis in Southern Zambia

(2013) Sungano Mharakurwa et al.   MALARIA JOURNAL

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

(2013) Olivo Miotto et al.   NATURE GENETICS

Human mobility patterns predict divergent epidemic dynamics among cities

(2013) B. D. Dalziel et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Effects of City Streets on an Urban Disease Vector

(2013) Corentin M. Barbu et al.   PLoS Computational Biology

Quantifying the Impact of Human Mobility on Malaria

(2012) A. Wesolowski et al.   SCIENCE

Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites

(2012) Alfred Amambua-Ngwa et al.   PLoS Genetics

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

High Resistance of Plasmodium falciparum to Sulphadoxine/Pyrimethamine in Northern Tanzania and the Emergence of dhps Resistance Mutation at Codon 581

(2009) Samwel Gesase et al.   PLoS One

Evidence for regular ongoing introductions of mosquito disease vectors into the Galapagos Islands

(2009) A. Bataille et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Origin and Biology of Simian Immunodeficiency Virus in Wild-Living Western Gorillas

(2008) J. Takehisa et al.   JOURNAL OF VIROLOGY