Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy

Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer

(2020) Jian Carrot-Zhang et al.   CANCER CELL

Breast cancer diagnosis by analysis of serum N-glycans using MALDI-TOF mass spectroscopy

(2020) Sae Byul Lee et al.   PLoS One

The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences

(2020) Issaku Yamada et al.   NATURE METHODS

Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics

(2020) Xing Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SPRINT-Gly: Predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties

(2019) Ghazaleh Taherzadeh et al.   BIOINFORMATICS

Protein Glycosylation and Tumor Microenvironment Alterations Driving Cancer Hallmarks

(2019) Andreia Peixoto et al.   Frontiers in Oncology

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

(2019) Miguel A. Rojas-Macias et al.   Nature Communications

Recent advances in glycoinformatic platforms for glycomics and glycoproteomics

(2019) Jodie L Abrahams et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk

(2018) Connie A. Remoroza et al.   ANALYTICAL CHEMISTRY

Glycosylation of Recombinant Anticancer Therapeutics in Different Expression Systems with Emerging Technologies

(2018) Tariq Nadeem et al.   CANCER RESEARCH

Aberrant glycosylation and cancer biomarker discovery: a promising and thorny journey

(2018) Mengmeng Wang et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

Glycomics@ExPASy: Bridging the gap

(2018) Julien Mariethoz et al.   MOLECULAR & CELLULAR PROTEOMICS

GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical

(2018) Davide Alocci et al.   JOURNAL OF PROTEOME RESEARCH

Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)

(2018) Michael Böhm et al.   NUCLEIC ACIDS RESEARCH

Glycosylation is a global target for androgen control in prostate cancer cells

(2017) Jennifer Munkley   ENDOCRINE-RELATED CANCER

GlyTouCan: an accessible glycan structure repository

(2017) Michael Tiemeyer et al.   GLYCOBIOLOGY

GlycoDeNovo – an Efficient Algorithm for Accurate de novo Glycan Topology Reconstruction from Tandem Mass Spectra

(2017) Pengyu Hong et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Over forty years of bladder cancer glycobiology: Where do glycans stand facing precision oncology?

(2017) Rita Azevedo et al.   Oncotarget

Glycoforms of CA125 antigen as a possible cancer marker

(2017) Miroslava M. Jankovic et al.   Cancer Biomarkers

Glycosylation as a marker for inflammatory arthritis

(2017) Simone Albrecht et al.   Cancer Biomarkers

Glycans and glycoproteins as specific biomarkers for cancer

(2016) Muchena J. Kailemia et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Mechanisms of disease: The human N-glycome

(2016) Gordan Lauc et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

The Role of Sialyl-Tn in Cancer

(2016) Jennifer Munkley   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

CSF N-glycoproteomics for early diagnosis in Alzheimer's disease

(2016) Angelo Palmigiano et al.   Journal of Proteomics

Hallmarks of glycosylation in cancer

(2016) Jennifer Munkley et al.   Oncotarget

GlycoMine struct : a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

(2016) Fuyi Li et al.   Scientific Reports

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

(2015) Fuyi Li et al.   BIOINFORMATICS

MassyTools: A High-Throughput Targeted Data Processing Tool for Relative Quantitation and Quality Control Developed for Glycomic and Glycoproteomic MALDI-MS

(2015) Bas C. Jansen et al.   JOURNAL OF PROTEOME RESEARCH

The Lectin Frontier Database (LfDB), and Data Generation Based on Frontal Affinity Chromatography

(2015) Jun Hirabayashi et al.   MOLECULES

Glycosylation-Based Serum Biomarkers for Cancer Diagnostics and Prognostics

(2015) Alan Kirwan et al.   Biomed Research International

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination

(2014) L. Gotz et al.   BIOINFORMATICS

Association of N-Glycosylation with Breast Carcinoma and Systemic Features Using High-Resolution Quantitative UPLC

(2014) Radka Saldova et al.   JOURNAL OF PROTEOME RESEARCH

Structural Documentation of Glycan Epitopes: Sequential Mass Spectrometry and Spectral Matching

(2014) David J. Ashline et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Specific Glycosylation of Membrane Proteins in Epithelial Ovarian Cancer Cell Lines: Glycan Structures Reflect Gene Expression and DNA Methylation Status

(2014) Merrina Anugraham et al.   MOLECULAR & CELLULAR PROTEOMICS

Expression and biochemical characterization of recombinant human epididymis protein 4

(2014) Ling Hua et al.   PROTEIN EXPRESSION AND PURIFICATION

Aberrant Glycosylation as Biomarker for Cancer: Focus on CD43

(2014) Franca Maria Tuccillo et al.   Biomed Research International

Validation of the curation pipeline of UniCarb-DB: Building a global glycan reference MS/MS repository

(2013) Matthew P. Campbell et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

(2013) Catharina Steentoft et al.   EMBO JOURNAL

UniCarbKB: building a knowledge platform for glycoproteomics

(2013) Matthew P. Campbell et al.   NUCLEIC ACIDS RESEARCH

In silico Platform for Prediction of N-, O- and C-Glycosites in Eukaryotic Protein Sequences

(2013) Jagat Singh Chauhan et al.   PLoS One

Cell surface protein glycosylation in cancer

(2013) Maja N. Christiansen et al.   PROTEOMICS

Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides

(2013) Arun V. Everest-Dass et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Loci Associated with N-Glycosylation of Human Immunoglobulin G Show Pleiotropy with Autoimmune Diseases and Haematological Cancers

(2013) Gordan Lauc et al.   PLoS Genetics

Glycosylation Network Analysis Toolbox: a MATLAB-based environment for systems glycobiology

(2012) G. Liu et al.   BIOINFORMATICS

The GlycomeAtlas tool for visualizing and querying glycome data

(2012) Y. Konishi et al.   BIOINFORMATICS

Computational prediction of N-linked glycosylation incorporating structural properties and patterns

(2012) Gwo-Yu Chuang et al.   BIOINFORMATICS

Hyperglycosylated Human Chorionic Gonadotropin in Serum of Testicular Cancer Patients

(2012) A. Lempiainen et al.   CLINICAL CHEMISTRY

N-linked Glycan Structures and Their Expressions Change in the Blood Sera of Ovarian Cancer Patients

(2012) William R. Alley et al.   JOURNAL OF PROTEOME RESEARCH

GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

(2012) Evan Maxwell et al.   PLoS One

UniCarb-DB: a database resource for glycomic discovery

(2011) Catherine A. Hayes et al.   BIOINFORMATICS

Novel Glycan Biomarkers for the Detection of Lung Cancer

(2011) James N. Arnold et al.   JOURNAL OF PROTEOME RESEARCH

Identification of Glycan Structure Alterations on Cell Membrane Proteins in Desoxyepothilone B Resistant Leukemia Cells

(2011) Miyako Nakano et al.   MOLECULAR & CELLULAR PROTEOMICS

Newly diagnosed and relapsed epithelial ovarian carcinoma: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up

(2010) N. Colombo et al.   ANNALS OF ONCOLOGY

Bioinformatics and molecular modeling in glycobiology

(2010) Martin Frank et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Alterations in glycosylation as biomarkers for cancer detection

(2010) C. A Reis et al.   JOURNAL OF CLINICAL PATHOLOGY

GlycomeDB--a unified database for carbohydrate structures

(2010) R. Ranzinger et al.   NUCLEIC ACIDS RESEARCH

Glycome-DB.org: A portal for querying across the digital world of carbohydrate sequences

(2009) René Ranzinger et al.   GLYCOBIOLOGY

A mathematical model to derive N-glycan structures and cellular enzyme activities from mass spectrometric data

(2009) Frederick J Krambeck et al.   GLYCOBIOLOGY

SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications

(2009) Hong Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Glycomics: Towards Bioinformatic Approaches to Understanding Glycosylation

(2008) Lara Mahal   Anti-Cancer Agents in Medicinal Chemistry

Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands

(2008) Gang Liu et al.   BIOINFORMATICS

GlycoBase and autoGU: tools for HPLC-based glycan analysis

(2008) M. P. Campbell et al.   BIOINFORMATICS

GlycomeDB – integration of open-access carbohydrate structure databases

(2008) René Ranzinger et al.   BMC BIOINFORMATICS

Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs

(2008) Yong-Zi Chen et al.   BMC BIOINFORMATICS

Prediction of glycosylation sites using random forests

(2008) Stephen E Hamby et al.   BMC BIOINFORMATICS

PredGPI: a GPI-anchor predictor

(2008) Andrea Pierleoni et al.   BMC BIOINFORMATICS

GlycoCT—a unifying sequence format for carbohydrates

(2008) S. Herget et al.   CARBOHYDRATE RESEARCH

SOACS index: an easy NMR-based query for glycan retrieval

(2008) Emmanuel Maes et al.   CARBOHYDRATE RESEARCH

Web Resources for the Glycoscientist

(2008) Thomas Lütteke   CHEMBIOCHEM

Mass Spectrometry and the Emerging Field of Glycomics

(2008) Joseph Zaia   CHEMISTRY & BIOLOGY

Long-term prognostic study of carcinoembryonic antigen (CEA) and carbohydrate antigen 15-3 (CA 15-3) in breast cancer

(2008) Masahiro Uehara et al.   International Journal of Clinical Oncology

Two Distinct Pathways for Cyclooxygenase-2 Protein Degradation

(2008) Uri R. Mbonye et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Effects of glycosylation on the stability of protein pharmaceuticals

(2008) Ricardo J. Solá et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans†

(2008) Alessio Ceroni et al.   JOURNAL OF PROTEOME RESEARCH

Targeted proteomic strategy for clinical biomarker discovery

(2008) Ralph Schiess et al.   Molecular Oncology

An Introduction to Bioinformatics for Glycomics Research

(2008) Kiyoko F. Aoki-Kinoshita   PLoS Computational Biology

Informatic innovations in glycobiology: relevance to drug discovery

(2007) H MAMITSUKA   DRUG DISCOVERY TODAY

Frontiers in glycomics: Bioinformatics and biomarkers in disease An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11–13, 2006)

(2007) Nicolle H. Packer et al.   PROTEOMICS