Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

New insights into redox control of starch degradation

(2015) Diana Santelia et al.   CURRENT OPINION IN PLANT BIOLOGY

Leaf Responses to Mild Drought Stress in Natural Variants of Arabidopsis

(2015) Pieter Clauw et al.   PLANT PHYSIOLOGY

Boron nitride as desalting material in combination with phosphopeptide enrichment in shotgun proteomics

(2014) Takeshi Furuhashi et al.   ANALYTICAL BIOCHEMISTRY

Sugar signals and the control of plant growth and development

(2014) Jeroen Lastdrager et al.   JOURNAL OF EXPERIMENTAL BOTANY

Dissecting the Phenotypic Components of Crop Plant Growth and Drought Responses Based on High-Throughput Image Analysis

(2014) Dijun Chen et al.   PLANT CELL

Exaggerated root respiration accounts for growth retardation in a starchless mutant ofArabidopsis thaliana

(2014) Katrin Brauner et al.   PLANT JOURNAL

 -Amylase1 and  -Amylase3 Are Plastidic Starch Hydrolases in Arabidopsis That Seem to Be Adapted for Different Thermal, pH, and Stress Conditions

(2014) J. D. Monroe et al.   PLANT PHYSIOLOGY

Natural variation and genetic constraints on drought tolerance

(2013) Thomas E Juenger   CURRENT OPINION IN PLANT BIOLOGY

Metabolomics in plant environmental physiology

(2013) Cecilia Brunetti et al.   JOURNAL OF EXPERIMENTAL BOTANY

Approximating subcellular organisation of carbohydrate metabolism during cold acclimation in different natural accessions ofArabidopsis thaliana

(2013) Thomas Nägele et al.   NEW PHYTOLOGIST

Post-translational regulation of cold acclimation response

(2013) Javier Barrero-Gil et al.   PLANT SCIENCE

Effects of abiotic stress on plants: a systems biology perspective

(2012) Grant R Cramer et al.   BMC PLANT BIOLOGY

The Simultaneous Abolition of Three Starch Hydrolases Blocks Transient Starch Breakdown inArabidopsis

(2012) Sebastian Streb et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

(2012) Xiaoliang Sun et al.   Metabolomics

Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism

(2012) Hannes Doerfler et al.   Metabolomics

Interaction of temperature and irradiance effects on photosynthetic acclimation in two accessions of Arabidopsis thaliana

(2012) Thijs L. Pons   PHOTOSYNTHESIS RESEARCH

Identification of a metabolic bottleneck for cold acclimation inArabidopsis thaliana

(2012) Thomas Nägele et al.   PLANT JOURNAL

Overexpression of PIP2;5 Aquaporin Alleviates Effects of Low Root Temperature on Cell Hydraulic Conductivity and Growth in Arabidopsis

(2012) S. H. Lee et al.   PLANT PHYSIOLOGY

Longitudinal trends in climate drive flowering time clines in North AmericanArabidopsis thaliana

(2012) Karen E. Samis et al.   Ecology and Evolution

The beginnings of crop phosphoproteomics: exploring early warning systems of stress

(2012) Christof Rampitsch et al.   Frontiers in Plant Science

Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

(2011) Wolfram Weckwerth   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Natural variation of Arabidopsis response to nitrogen availability

(2011) Sobia Ikram et al.   JOURNAL OF EXPERIMENTAL BOTANY

Water deficits uncouple growth from photosynthesis, increase C content, and modify the relationships between C and growth in sink organs

(2011) Bertrand Muller et al.   JOURNAL OF EXPERIMENTAL BOTANY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Green systems biology — From single genomes, proteomes and metabolomes to ecosystems research and biotechnology

(2011) Wolfram Weckwerth   Journal of Proteomics

Plant proteome changes under abiotic stress — Contribution of proteomics studies to understanding plant stress response

(2011) Klára Kosová et al.   Journal of Proteomics

Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis

(2011) Mona M. Monfared et al.   PLANT JOURNAL

Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters

(2011) Waltraud X. Schulze et al.   PLANT JOURNAL

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics

(2011) D. Weigel   PLANT PHYSIOLOGY

Carbon partitioning and the impact of starch deficiency on the initial response of Arabidopsis to chilling temperatures

(2011) Richard Sicher   PLANT SCIENCE

A systems biology approach for the analysis of carbohydrate dynamics during acclimation to low temperature in Arabidopsis thaliana

(2010) Thomas Nägele et al.   FEBS Journal

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

A role for circadian evening elements in cold-regulated gene expression in Arabidopsis

(2009) Michael D. Mikkelsen et al.   PLANT JOURNAL

Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A

(2009) K. Maruyama et al.   PLANT PHYSIOLOGY

Starch as a major integrator in the regulation of plant growth

(2009) R. Sulpice et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis thaliana as a model organism in systems biology

(2009) Jaimie M. Van Norman et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Sucrose helps regulate cold acclimation of Arabidopsis thaliana

(2008) I. Rekarte-Cowie et al.   JOURNAL OF EXPERIMENTAL BOTANY

Intraspecfic variation in cold-temperature metabolic phenotypes of Arabidopsis lyrata ssp. petraea

(2008) Matthew P. Davey et al.   Metabolomics

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY