Effects of abiotic stress on plants: a systems biology perspective

CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

(2011) Pieter Audenaert et al.   BIOINFORMATICS

The complexity of gene expression dynamics revealed by permutation entropy

(2011) Xiaoliang Sun et al.   BMC BIOINFORMATICS

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)

(2011) W Walter Lorenz et al.   BMC GENOMICS

Systems biology approaches to abscisic acid signaling

(2011) Taishi Umezawa   JOURNAL OF PLANT RESEARCH

Quantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells

(2011) Maik Böhmer et al.   PLANT JOURNAL

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

(2011) Miyako Kusano et al.   PLANT JOURNAL

Refilling embolized xylem conduits: Is it a matter of phloem unloading?

(2011) Andrea Nardini et al.   PLANT SCIENCE

Climate Trends and Global Crop Production Since 1980

(2011) D. B. Lobell et al.   SCIENCE

ROS signaling: the new wave?

(2011) Ron Mittler et al.   TRENDS IN PLANT SCIENCE

Guard Cell Signal Transduction Network: Advances in Understanding Abscisic Acid, CO2, and Ca2+Signaling

(2010) Tae-Houn Kim et al.   Annual Review of Plant Biology

OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data: Fig. 1.

(2010) Tian Xia et al.   BIOINFORMATICS

Selective control of amino acid metabolism by the GCN2 eIF2 kinase pathway in Saccharomyces cerevisiae

(2010) John M Zaborske et al.   BMC BIOCHEMISTRY

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

(2010) Kil-Young Yun et al.   BMC PLANT BIOLOGY

Reciprocity between abscisic acid and ethylene at the onset of berry ripening and after harvest

(2010) Liang Sun et al.   BMC PLANT BIOLOGY

More from less: plant growth under limited water

(2010) Aleksandra Skirycz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Prospects of yeast systems biology for human health: integrating lipid, protein and energy metabolism

(2010) Dina Petranovic et al.   FEMS YEAST RESEARCH

Early abscisic acid signal transduction mechanisms: newly discovered components and newly emerging questions

(2010) K. E. Hubbard et al.   GENES & DEVELOPMENT

Water Deficit Increases Stilbene Metabolism in Cabernet Sauvignon Berries

(2010) Laurent G. Deluc et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Integration of General Amino Acid Control and Target of Rapamycin (TOR) Regulatory Pathways in Nitrogen Assimilation in Yeast

(2010) Kirk A. Staschke et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Photosynthesis and drought: can we make metabolic connections from available data?

(2010) C. Pinheiro et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Arabidopsis bZIP1 Transcription Factor Is Involved in Sugar Signaling, Protein Networking, and DNA Binding

(2010) Shin Gene Kang et al.   Molecular Plant

Narrowing Down the Targets: Towards Successful Genetic Engineering of Drought-Tolerant Crops

(2010) Shujun Yang et al.   Molecular Plant

Molecular Basis of the Core Regulatory Network in ABA Responses: Sensing, Signaling and Transport

(2010) T. Umezawa et al.   PLANT AND CELL PHYSIOLOGY

Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-Glucosyltransferase UGT74E2 Modulates Arabidopsis Architecture and Water Stress Tolerance

(2010) V. B. Tognetti et al.   PLANT CELL

Endoplasmic Reticulum Protein Quality Control and Its Relationship to Environmental Stress Responses in Plants

(2010) Jian-Xiang Liu et al.   PLANT CELL

Time of day shapes Arabidopsis drought transcriptomes

(2010) Olivia Wilkins et al.   PLANT JOURNAL

Arabidopsis Plants Acclimate to Water Deficit at Low Cost through Changes of Carbon Usage: An Integrated Perspective Using Growth, Metabolite, Enzyme, and Gene Expression Analysis

(2010) Irène Hummel et al.   PLANT PHYSIOLOGY

Identification of Putative Stage-Specific Grapevine Berry Biomarkers and Omics Data Integration into Networks

(2010) A. Zamboni et al.   PLANT PHYSIOLOGY

The Protein Kinase SnRK2.6 Mediates the Regulation of Sucrose Metabolism and Plant Growth in Arabidopsis

(2010) Z. Zheng et al.   PLANT PHYSIOLOGY

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

(2010) K. G. Kline et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomics insights into plant signaling and development

(2010) Kerstin Kaufmann et al.   PROTEOMICS

The interface between metabolic and stress signalling

(2009) S. J. Hey et al.   ANNALS OF BOTANY

Arabidopsis gene co-expression network and its functional modules

(2009) Linyong Mao et al.   BMC BIOINFORMATICS

Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay

(2009) Laurent G Deluc et al.   BMC GENOMICS

Ethylene signaling and response: where different regulatory modules meet

(2009) Anna N Stepanova et al.   CURRENT OPINION IN PLANT BIOLOGY

Cloning and functional analysis of 9-cis-epoxycarotenoid dioxygenase (NCED) genes encoding a key enzyme during abscisic acid biosynthesis from peach and grape fruits

(2009) Mei Zhang et al.   JOURNAL OF PLANT PHYSIOLOGY

Transcript Profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR Arrhythmic Triple Mutant Reveals a Role for the Circadian Clock in Cold Stress Response

(2009) Norihito Nakamichi et al.   PLANT AND CELL PHYSIOLOGY

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

SnRK1 (SNF1-related kinase 1) has a central role in sugar and ABA signalling inArabidopsis thaliana

(2009) Mathieu Jossier et al.   PLANT JOURNAL

Stress-induced changes in theArabidopsis thalianatranscriptome analyzed using whole-genome tiling arrays

(2009) Georg Zeller et al.   PLANT JOURNAL

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation

(2009) Takuya Yoshida et al.   PLANT JOURNAL

Gene-expression profiling of grape bud response to two alternative dormancy-release stimuli expose possible links between impaired mitochondrial activity, hypoxia, ethylene-ABA interplay and cell enlargement

(2009) Ron Ophir et al.   PLANT MOLECULAR BIOLOGY

Drought and Abscisic Acid Effects on Aquaporin Content Translate into Changes in Hydraulic Conductivity and Leaf Growth Rate: A Trans-Scale Approach

(2009) B. Parent et al.   PLANT PHYSIOLOGY

Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A

(2009) K. Maruyama et al.   PLANT PHYSIOLOGY

Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions

(2009) S.-J. Oh et al.   PLANT PHYSIOLOGY

Arabidopsis Protein Kinases GRIK1 and GRIK2 Specifically Activate SnRK1 by Phosphorylating Its Activation Loop

(2009) W. Shen et al.   PLANT PHYSIOLOGY

Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots

(2009) P. Armengaud et al.   PLANT PHYSIOLOGY

Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions

(2009) Jérôme Grimplet et al.   PROTEOMICS

Emerging connections in the ethylene signaling network

(2009) Sang-Dong Yoo et al.   TRENDS IN PLANT SCIENCE

Conceptual framework for drought phenotyping during molecular breeding

(2009) Ghasem Hosseini Salekdeh et al.   TRENDS IN PLANT SCIENCE

Arabidopsis eIF2α kinase GCN2 is essential for growth in stress conditions and is activated by wounding

(2008) Sébastien Lageix et al.   BMC PLANT BIOLOGY

Abscisic Acid-mediated Epigenetic Processes in Plant Development and Stress Responses

(2008) Viswanathan Chinnusamy et al.   Journal of Integrative Plant Biology

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

(2008) Adam M Feist et al.   NATURE BIOTECHNOLOGY

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range

(2008) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

(2008) Hideki Goda et al.   PLANT JOURNAL

Stimulus-induced downregulation of root water transport involves reactive oxygen species-activated cell signalling and plasma membrane intrinsic protein internalization

(2008) Yann Boursiac et al.   PLANT JOURNAL

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE

Convergent energy and stress signaling

(2008) Elena Baena-González et al.   TRENDS IN PLANT SCIENCE