Experimental evidence of microbial inheritance in plants and transmission routes from seed to phyllosphere and root

Inheritance of seed and rhizosphere microbial communities through plant–soil feedback and soil memory

(2019) Hyun Gi Kong et al.   Environmental Microbiology Reports

A few Ascomycota taxa dominate soil fungal communities worldwide

(2019) Eleonora Egidi et al.   Nature Communications

Shifts in the Composition of the Microbiota of Stored Wheat Grains in Response to Fumigation

(2019) Manoj Kumar Solanki et al.   Frontiers in Microbiology

Seeds of native alpine plants host unique microbial communities embedded in cross-kingdom networks

(2019) Birgit Wassermann et al.   Microbiome

Distinguishing nutrient‐dependent plant driven bacterial colonization patterns in alfalfa

(2019) Katherine Moccia et al.   Environmental Microbiology Reports

Saving seed microbiomes

(2018) Gabriele Berg et al.   ISME Journal

Nutrient-Dependent Impact of Microbes on Drosophila suzukii Development

(2018) XiaoLi Bing et al.   mBio

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

(2018) Dániel G. Knapp et al.   Scientific Reports

Diversity and bioactive potential of culturable fungal endophytes of Dysosma versipellis; a rare medicinal plant endemic to China

(2018) Xiaoming Tan et al.   Scientific Reports

What Is There in Seeds? Vertically Transmitted Endophytic Resources for Sustainable Improvement in Plant Growth

(2018) Raheem Shahzad et al.   Frontiers in Plant Science

Conservation and transmission of seed bacterial endophytes across generations following crossbreeding and repeated inbreeding of rice at different geographic locations

(2018) Denver I. Walitang et al.   MicrobiologyOpen

Apple endophytic microbiota of different rootstock/scion combinations suggests a genotype-specific influence

(2018) Jia Liu et al.   Microbiome

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Exploitation of new endophytic bacteria and their ability to promote sugarcane growth and nitrogen nutrition

(2018) Adriana Parada Dias da Silveira et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

A Hypothetical Bottleneck in the Plant Microbiome

(2018) George Newcombe et al.   Frontiers in Microbiology

Endophytic bacterial and fungal communities transmitted from cotyledons and germs in peanut (Arachis hypogaea L.) sprouts

(2017) Yali Huang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Lynn Margulis and the endosymbiont hypothesis: 50 years later

(2017) Michael W. Gray   MOLECULAR BIOLOGY OF THE CELL

Bacterial niches inside seeds of Cucumis melo L.

(2017) Hanoch Glassner et al.   PLANT AND SOIL

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

(2017) Yun Kit Yeoh et al.   Nature Communications

Endophytic bacteria associated with endangered plant Ferula sinkiangensis K. M. Shen in an arid land: diversity and plant growth-promoting traits

(2017) Yonghong Liu et al.   Journal of Arid Land

Mitochondria—A billion years of cohabitation

(2017) Roland G. Roberts   PLOS BIOLOGY

A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds

(2017) Birgit Mitter et al.   Frontiers in Microbiology

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

(2017) Yunzeng Zhang et al.   Microbiome

The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens

(2017) Daria Rybakova et al.   Microbiome

The Cucurbita pepo seed microbiome: genotype-specific composition and implications for breeding

(2016) Eveline Adam et al.   PLANT AND SOIL

Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies

(2016) Murali Gopal et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Multiorganismal Insects: Diversity and Function of Resident Microorganisms

(2015) Angela E. Douglas   Annual Review of Entomology

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

The Microbiome of Pinus muricata Ectomycorrhizae: Community Assemblages, Fungal Species Effects, and Burkholderia as Important Bacteria in Multipartnered Symbioses

(2015) Nhu H. Nguyen et al.   MICROBIAL ECOLOGY

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

Vertical transmission of fungal endophytes is widespread in forbs

(2014) Susan Hodgson et al.   Ecology and Evolution

Diversity of the spinach (Spinacia oleracea) spermosphere and phyllosphere bacterial communities

(2013) Gabriela Lopez-Velasco et al.   FEMS MICROBIOLOGY LETTERS

The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis

(2013) Adam C-N Wong et al.   ISME Journal

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Bacterial community compositions of tomato (Lycopersicum esculentum Mill.) seeds and plant growth promoting activity of ACC deaminase producing Bacillus subtilis (HYT-12-1) on tomato seedlings

(2013) Mingshuang Xu et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization

(2011) Stéphane Compant et al.   MICROBIAL ECOLOGY

Microbial Diversity Inside Pumpkins: Microhabitat-Specific Communities Display a High Antagonistic Potential Against Phytopathogens

(2011) Michael Fürnkranz et al.   MICROBIAL ECOLOGY

Incorporating the process of vertical transmission into understanding of host-symbiont dynamics

(2011) P. E. Gundel et al.   OIKOS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phaseolus vulgaris seed-borne endophytic community with novel bacterial species such as Rhizobium endophyticum sp. nov.

(2010) Aline López-López et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Amplification of soil fungal community DNA using the ITS86F and ITS4 primers

(2009) Tony Vancov et al.   FEMS MICROBIOLOGY LETTERS

Endophytic Bacteria Associated with Growing Shoot Tips of Banana (Musa sp.) cv. Grand Naine and the Affinity of Endophytes to the Host

(2009) Pious Thomas et al.   MICROBIAL ECOLOGY

Burkholderiaspp. are the most competitive symbionts ofMimosa, particularly under N-limited conditions

(2008) Geoffrey N. Elliott et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of endophytic bacteria fromEucalyptusspecies seeds and colonization of seedlings byPantoea agglomerans

(2008) Anderson Ferreira et al.   FEMS MICROBIOLOGY LETTERS