The genome of the marine monogonont rotifer Brachionus rotundiformis and insight into species-specific detoxification components in Brachionus spp.

The genome of the marine rotifer Brachionus koreanus sheds light on the antioxidative defense system in response to 2-ethyl-phenanthrene and piperonyl butoxide

(2020) Jun Chul Park et al.   AQUATIC TOXICOLOGY

Adverse effects, expression of defense-related genes, and oxidative stress-induced MAPK pathway in the benzo[α]pyrene-exposed rotifer Brachionus rotundiformis

(2019) Jeonghoon Han et al.   AQUATIC TOXICOLOGY

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

(2019) Ling Xu et al.   NUCLEIC ACIDS RESEARCH

The genome of the marine monogonont rotifer Brachionus plicatilis: Genome-wide expression profiles of 28 cytochrome P450 genes in response to chlorpyrifos and 2-ethyl-phenanthrene

(2019) Jeonghoon Han et al.   AQUATIC TOXICOLOGY

The protective role of multixenobiotic resistance (MXR)-mediated ATP-binding cassette (ABC) transporters in biocides-exposed rotifer Brachionus koreanus

(2018) Young Hwan Lee et al.   AQUATIC TOXICOLOGY

Genome-wide identification of 99 autophagy-related ( Atg ) genes in the monogonont rotifer Brachionus spp. and transcriptional modulation in response to cadmium

(2018) Hye-Min Kang et al.   AQUATIC TOXICOLOGY

Two independent sulfation processes regulate mouth-form plasticity in the nematodePristionchus pacificus

(2018) Suryesh Namdeo et al.   DEVELOPMENT

The genome of the freshwater monogonont rotifer Brachionus calyciflorus

(2018) Hui-Su Kim et al.   Molecular Ecology Resources

Thiamethoxam Resistance in Aphis gossypii Glover Relies on Multiple UDP-Glucuronosyltransferases

(2018) Yiou Pan et al.   Frontiers in Physiology

Adverse effects of two pharmaceuticals acetaminophen and oxytetracycline on life cycle parameters, oxidative stress, and defensome system in the marine rotifer Brachionus rotundiformis

(2018) Jun Chul Park et al.   AQUATIC TOXICOLOGY

Body size-dependent interspecific tolerance to cadmium and their molecular responses in the marine rotifer Brachionus spp.

(2018) Hye-Min Kang et al.   AQUATIC TOXICOLOGY

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

(2017) Vedran Franke et al.   GENOME RESEARCH

Complete mitochondrial genome of the monogonont rotifer Brachionus rotundiformis (Rotifera, Brachionidae)

(2017) Hui-Su Kim et al.   Mitochondrial DNA Part B-Resources

Updated perspectives on the cytosolic sulfotransferases (SULTs) and SULT-mediated sulfation

(2016) Masahito Suiko et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Monogonont rotifers as model systems for the study of micro-evolutionary adaptation and its eco-evolutionary implications

(2016) Steven A. J. Declerck et al.   HYDROBIOLOGIA

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

(2014) Hongshan Jiang et al.   BMC BIOINFORMATICS

Genome-wide identification of whole ATP-binding cassette (ABC) transporters in the intertidal copepod Tigriopus japonicus

(2014) Chang-Bum Jeong et al.   BMC GENOMICS

Metabolic enzyme activities, metabolism-related genes expression and bioaccumulation in juvenile white shrimp Litopenaeus vannamei exposed to benzo[a]pyrene

(2014) Xianyun Ren et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Hepatic expression patterns of aryl hydrocarbon receptor, pregnane X receptor, two cytochrome P450s and five phase II metabolism genes responsive to 17alpha-methyltestosterone in rare minnow Gobiocypris rarus

(2014) Jiancao Gao et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Bacterial origin of a diverse family of UDP-glycosyltransferase genes in the Tetranychus urticae genome

(2014) Seung-Joon Ahn et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Intrapopulation Genome Size Variation in D. melanogaster Reflects Life History Variation and Plasticity

(2014) Lisa L. Ellis et al.   PLoS Genetics

The UDP-glucuronosyltransferases: Their role in drug metabolism and detoxification

(2013) Andrew Rowland et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies

(2012) S. Huang et al.   GENOME RESEARCH

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Ecotoxicology, ecophysiology, and mechanistic studies with rotifers

(2010) Hans-U. Dahms et al.   AQUATIC TOXICOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TEclass--a tool for automated classification of unknown eukaryotic transposable elements

(2009) G. Abrusan et al.   BIOINFORMATICS

The ABC transporter gene family of Daphnia pulex

(2009) Armin Sturm et al.   BMC GENOMICS

Cloning, Expression, and Characterization of Cytosolic Sulfotransferase Isozymes fromDrosophila melanogaster

(2008) Kenji HATTORI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Genome size diversity in the family Drosophilidae

(2008) T R Gregory et al.   HEREDITY

Massive Horizontal Gene Transfer in Bdelloid Rotifers

(2008) E. A. Gladyshev et al.   SCIENCE