Plant roots employ cell-layer-specific programs to respond to pathogenic and beneficial microbes

Co-incidence of Damage and Microbial Patterns Controls Localized Immune Responses in Roots

(2020) Feng Zhou et al.   CELL

Regulation of Cell Type-Specific Immunity Networks in Arabidopsis Roots

(2020) Charlotte Rich-Griffin et al.   PLANT CELL

Dynamics of gene expression in single root cells of A. thaliana

(2019) Ken Jean-Baptiste et al.   PLANT CELL

A Gain-of-Function Screen Reveals Redundant ERF Transcription Factors Providing Opportunities for Resistance Breeding Toward the Vascular Fungal Pathogen Verticillium longisporum

(2019) Christian Fröschel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Root endodermal barrier system contributes to defence against plant‐parasitic cyst and root‐knot nematodes

(2019) Julia Holbein et al.   PLANT JOURNAL

A wall with integrity: surveillance and maintenance of the plant cell wall under stress

(2019) Yue Rui et al.   NEW PHYTOLOGIST

The Coordination of Ethylene and Other Hormones in Primary Root Development

(2019) Hua Qin et al.   Frontiers in Plant Science

The Pivotal Role of Ethylene in Plant Growth

(2018) Marieke Dubois et al.   TRENDS IN PLANT SCIENCE

Physical and Chemical Barriers in Root Tissues Contribute to Quantitative Resistance to Fusarium oxysporum f. sp. pisi in Pea

(2018) Moustafa Bani et al.   Frontiers in Plant Science

Ethylene and 1-Aminocyclopropane-1-carboxylate (ACC) in Plant–Bacterial Interactions

(2018) Francisco X. Nascimento et al.   Frontiers in Plant Science

Application of laser microdissection to study phytoplasma site-specific gene expression in the model plant Arabidopsis thaliana

(2018) Marika Rossi et al.   MICROBIOLOGICAL RESEARCH

Plant Immunity Is Compartmentalized and Specialized in Roots

(2018) Coralie Chuberre et al.   Frontiers in Plant Science

Global translational reprogramming is a fundamental layer of immune regulation in plants

(2017) Guoyong Xu et al.   NATURE

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Cell-type- and tissue-specific transcriptomes of the white spruce (Picea glauca ) bark unmask fine-scale spatial patterns of constitutive and induced conifer defense

(2017) Jose M. Celedon et al.   PLANT JOURNAL

In roots of Arabidopsis thaliana, the damage-associated molecular pattern AtPep1 is a stronger elicitor of immune signalling than flg22 or the chitin heptamer

(2017) Lorenzo Poncini et al.   PLoS One

Transcriptome dynamic of Arabidopsis roots infected with Phytophthora parasitica identifies VQ29, a gene induced during the penetration and involved in the restriction of infection

(2017) Jo-Yanne Le Berre et al.   PLoS One

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

Adaptation of Root Function by Nutrient-Induced Plasticity of Endodermal Differentiation

(2016) Marie Barberon et al.   CELL

Verticillium longisporum, the invisible threat to oilseed rape and other brassicaceous plant hosts

(2016) Jasper R. L. Depotter et al.   MOLECULAR PLANT PATHOLOGY

Data-driven hypothesis weighting increases detection power in genome-scale multiple testing

(2016) Nikolaos Ignatiadis et al.   NATURE METHODS

Sebacinales - one thousand and one interactions with land plants

(2016) Michael Weiß et al.   NEW PHYTOLOGIST

Pathogen-Responsive MPK3 and MPK6 Reprogram the Biosynthesis of Indole Glucosinolates and Their Derivatives in Arabidopsis Immunity

(2016) Juan Xu et al.   PLANT CELL

How Phytohormones Shape Interactions between Plants and the Soil-Borne Fungus Fusarium oxysporum

(2016) Xiaotang Di et al.   Frontiers in Plant Science

A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence

(2015) Jakub Rajniak et al.   NATURE

Tissue-specific FLAGELLIN-SENSING 2 (FLS2) expression in roots restores immune responses in Arabidopsisfls2mutants

(2015) Ines Wyrsch et al.   NEW PHYTOLOGIST

Mutualistic root endophytism is not associated with the reduction of saprotrophic traits and requires a noncompromised plant innate immunity

(2015) Urs Lahrmann et al.   NEW PHYTOLOGIST

Immobilized subpopulations of leaf epidermal mitochondria mediate PEN2-dependent pathogen entry control in Arabidopsis

(2015) Rene Fuchs et al.   PLANT CELL

The MYB36 transcription factor orchestrates Casparian strip formation

(2015) Takehiro Kamiya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

What lies beneath: belowground defense strategies in plants

(2015) Barbara De Coninck et al.   TRENDS IN PLANT SCIENCE

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Transcriptome dynamics of Arabidopsis thaliana root penetration by the oomycete pathogen Phytophthora parasitica

(2014) Agnès Attard et al.   BMC GENOMICS

MYB34, MYB51, and MYB122 Distinctly Regulate Indolic Glucosinolate Biosynthesis in Arabidopsis thaliana

(2014) Henning Frerigmann et al.   Molecular Plant

The Arabidopsis transcription factor bZIP11 activates auxin-mediated transcription by recruiting the histone acetylation machinery

(2014) Christoph Weiste et al.   Nature Communications

A receptor-like kinase mutant with absent endodermal diffusion barrier displays selective nutrient homeostasis defects

(2014) Alexandre Pfister et al.   eLife

Microgenomics: Genome-Scale, Cell-Specific Monitoring of Multiple Gene Regulation Tiers

(2013) J. Bailey-Serres   Annual Review of Plant Biology

A critical review on fungi mediated plant responses with special emphasis to Piriformospora indica on improved production and protection of crops

(2013) Mohammad Wahid Ansari et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Host-related metabolic cues affect colonization strategies of a root endophyte

(2013) Urs Lahrmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Activation and Production of Tryptophan-Derived Secondary Metabolites in Arabidopsis Roots Contributes to the Defense against the Fungal Vascular Pathogen Verticillium longisporum

(2012) Tim Iven et al.   Molecular Plant

Ethylene Signaling Pathway Modulates Attractiveness of Host Roots to the Root-Knot NematodeMeloidogyne hapla

(2012) Sylwia L. Fudali et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Ethylene Supports Colonization of Plant Roots by the Mutualistic Fungus Piriformospora indica

(2012) Behnam Khatabi et al.   PLoS One

Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin

(2012) S. Naseer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

A novel protein family mediates Casparian strip formation in the endodermis

(2011) Daniele Roppolo et al.   NATURE

Broad-Spectrum Suppression of Innate Immunity Is Required for Colonization of Arabidopsis Roots by the Fungus Piriformospora indica

(2011) S. Jacobs et al.   PLANT PHYSIOLOGY

Phytoalexins in defense against pathogens

(2011) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor

(2010) Alexandra Schlereth et al.   NATURE

Ethylene signalling and ethylene-targeted transcription factors are required to balance beneficial and nonbeneficial traits in the symbiosis between the endophytic fungus Piriformospora indica and Arabidopsis thaliana

(2010) Iris Camehl et al.   NEW PHYTOLOGIST

The immediate activation of defense responses in Arabidopsis roots is not sufficient to prevent Phytophthora parasitica infection

(2010) Agnès Attard et al.   NEW PHYTOLOGIST

Innate Immune Responses Activated in Arabidopsis Roots by Microbe-Associated Molecular Patterns

(2010) Y. A. Millet et al.   PLANT CELL

A Combinatorial Interplay Among the 1-Aminocyclopropane-1-Carboxylate Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana

(2009) A. Tsuchisaka et al.   GENETICS

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis

(2009) A. Mustroph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Arabidopsis cytochrome P450 CYP86A1 encodes a fatty acid ω-hydroxylase involved in suberin monomer biosynthesis

(2008) Rene Höfer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation inArabidopsis thaliana

(2008) Cristina Branco-Price et al.   PLANT JOURNAL

A Glucosinolate Metabolism Pathway in Living Plant Cells Mediates Broad-Spectrum Antifungal Defense

(2008) P. Bednarek et al.   SCIENCE