Comprehensive phylogenomic analyses re-write the evolution of parasitism within cynipoid wasps

Evolution of green lacewings (Neuroptera: Chrysopidae): an anchored phylogenomics approach

(2019) Shaun L. Winterton et al.   SYSTEMATIC ENTOMOLOGY

Optimised DNA extraction and library preparation for minute arthropods: application to target enrichment in chalcid wasps used for biocontrol

(2019) Astrid Cruaud et al.   Molecular Ecology Resources

Statistical binning leads to profound model violation due to gene tree error incurred by trying to avoid gene tree error

(2019) Richard H. Adams et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bioinformatic analysis suggests potential mechanisms underlying parasitoid venom evolution and function

(2019) Gloria Alvarado et al.   GENOMICS

Sequence capture phylogenomics of historical ethanol‐preserved museum specimens: Unlocking the rest of the vault

(2019) Shahan Derkarabetian et al.   Molecular Ecology Resources

Gall Wasp Transcriptomes Unravel Potential Effectors Involved in Molecular Dialogues With Oak and Rose

(2019) Sébastien Cambier et al.   Frontiers in Physiology

Anchored hybrid enrichment challenges the traditional classification of flesh flies (Diptera: Sarcophagidae)

(2019) Eliana Buenaventura et al.   SYSTEMATIC ENTOMOLOGY

Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp

(2019) Jack Hearn et al.   PLoS Genetics

Estimating Improved Partitioning Schemes for Ultraconserved Elements

(2018) Victor A Tagliacollo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success

(2018) Ralph S. Peters et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

The impact of GC bias on phylogenetic accuracy using targeted enrichment phylogenomic data

(2017) Silas Bossert et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ultraconserved elements show utility in phylogenetic inference of Adephaga (Coleoptera) and suggest paraphyly of ‘Hydradephaga’

(2017) STEPHEN M. BACA et al.   SYSTEMATIC ENTOMOLOGY

AMAS: a fast tool for alignment manipulation and computing of summary statistics

(2016) Marek L. Borowiec   PeerJ

Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens

(2016) Bonnie B. Blaimer et al.   PLoS One

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants

(2015) Bonnie B. Blaimer et al.   BMC EVOLUTIONARY BIOLOGY

Sequence capture of ultraconserved elements from bird museum specimens

(2015) John E. McCormack et al.   Molecular Ecology Resources

What's in an Outgroup? The Impact of Outgroup Choice on the Phylogenetic Position of Thalattosuchia (Crocodylomorpha) and the Origin of Crocodyliformes

(2015) Eric W. Wilberg   SYSTEMATIC BIOLOGY

Ultra-large alignments using phylogeny-aware profiles

(2015) Nam-phuong D. Nguyen et al.   GENOME BIOLOGY

Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses

(2015) Md Shamsuzzoha Bayzid et al.   PLoS One

Phylogeny, Evolution and Classification of Gall Wasps: The Plot Thickens

(2015) Fredrik Ronquist et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Selecting optimal partitioning schemes for phylogenomic datasets

(2014) Robert Lanfear et al.   BMC EVOLUTIONARY BIOLOGY

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera

(2014) Brant C. Faircloth et al.   Molecular Ecology Resources

The Description ofRovnoeucoila tympanomorphaBuffington and Perkovsky, a New Genus and Species of Fossil Eucoiline, with Observations on the Asynchronous Evolution of Diglyphosematini (Hymenoptera: Figitidae: Eucoilinae)

(2014) Matthew L. Buffington et al.   PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON

A phylogenetic analysis of the megadiverse Chalcidoidea (Hymenoptera)

(2013) John M. Heraty et al.   CLADISTICS

TESTING THE MUSEUM VERSUS CRADLE TROPICAL BIOLOGICAL DIVERSITY HYPOTHESIS: PHYLOGENY, DIVERSIFICATION, AND ANCESTRAL BIOGEOGRAPHIC RANGE EVOLUTION OF THE ANTS

(2013) Corrie S. Moreau et al.   EVOLUTION

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

(2012) Brant C. Faircloth et al.   PLoS One

Divergence estimates and early evolutionary history of Figitidae (Hymenoptera: Cynipoidea)

(2012) MATTHEW L. BUFFINGTON et al.   SYSTEMATIC ENTOMOLOGY

Phylogenetic relationships among superfamilies of Hymenoptera

(2011) Michael J. Sharkey et al.   CLADISTICS

Evolution of the hymenopteran megaradiation

(2011) John Heraty et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Episodic radiations in the fly tree of life

(2011) B. M. Wiegmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)

(2011) Hervé Sauquet et al.   SYSTEMATIC BIOLOGY

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

(2011) Sheila Fisher et al.   GENOME BIOLOGY

Relationships among the major lineages of Dictyoptera: the effect of outgroup selection on dictyopteran tree topology

(2008) JESSICA L. WARE et al.   SYSTEMATIC ENTOMOLOGY