- Home
- Publications
- Publication Search
- Publication Details
Title
Selecting optimal partitioning schemes for phylogenomic datasets
Authors
Keywords
Model selection, Partitioning, Partitionfinder, BIC, AICc, AIC, Phylogenetics, Phylogenomics, Clustering, Hierarchical clustering
Journal
BMC EVOLUTIONARY BIOLOGY
Volume 14, Issue 1, Pages 82
Publisher
Springer Nature
Online
2014-04-18
DOI
10.1186/1471-2148-14-82
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Searching for the optimal data partitioning strategy in mitochondrial phylogenomics: A phylogeny of Acridoidea (Insecta: Orthoptera: Caelifera) as a case study
- (2013) James R. Leavitt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
- (2013) Nicolas Lartillot et al. SYSTEMATIC BIOLOGY
- Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap
- (2013) Philippe Gayral et al. PLoS Genetics
- The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates
- (2012) Iker Irisarri et al. BMC GENOMICS
- Bayesian Selection of Nucleotide Substitution Models and Their Site Assignments
- (2012) Chieh-Hsi Wu et al. MOLECULAR BIOLOGY AND EVOLUTION
- PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
- (2012) R. Lanfear et al. MOLECULAR BIOLOGY AND EVOLUTION
- Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: An avian case study
- (2012) Alexis F.L.A. Powell et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia
- (2012) Jonathan J. Fong et al. PLoS One
- Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
- (2012) M. dos Reis et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
- (2012) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- The Evolution of Pharyngognathy: A Phylogenetic and Functional Appraisal of the Pharyngeal Jaw Key Innovation in Labroid Fishes and Beyond
- (2012) P. C. Wainwright et al. SYSTEMATIC BIOLOGY
- Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
- (2012) Brant C. Faircloth et al. SYSTEMATIC BIOLOGY
- A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians
- (2011) R. Alexander Pyron et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Molecular phylogeny and biogeography of Malagasy frogs of the genus Gephyromantis
- (2011) Nathalie Kaffenberger et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Acoelomorph flatworms are deuterostomes related to Xenoturbella
- (2011) Hervé Philippe et al. NATURE
- Improving animal phylogenies with genomic data
- (2011) Maximilian J. Telford et al. TRENDS IN GENETICS
- Recent Trends in Molecular Phylogenetic Analysis: Where to Next?
- (2010) C. Blair et al. JOURNAL OF HEREDITY
- Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks
- (2010) Simon Y. W. Ho et al. Mitochondrial DNA
- A Phylogenomic Approach to Resolve the Arthropod Tree of Life
- (2010) K. Meusemann et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogeny and Biogeography of Dolichoderine Ants: Effects of Data Partitioning and Relict Taxa on Historical Inference
- (2010) Philip S. Ward et al. SYSTEMATIC BIOLOGY
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Musca domestica Salivary Gland Hypertrophy Virus, a Globally Distributed Insect Virus That Infects and Sterilizes Female Houseflies
- (2009) P. Prompiboon et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- A Bayesian Evaluation of Human Mitochondrial Substitution Rates
- (2008) Phillip Endicott et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Molecular phylogeny and divergence times of Malagasy tenrecs: Influence of data partitioning and taxon sampling on dating analyses
- (2008) Céline Poux et al. BMC EVOLUTIONARY BIOLOGY
- A Phylogenomic Study of Birds Reveals Their Evolutionary History
- (2008) S. J. Hackett et al. SCIENCE
- Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci
- (2008) Chenhong Li et al. SYSTEMATIC BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started