Probabilistic graphlets capture biological function in probabilistic molecular networks

Building blocks are synthesized on demand during the yeast cell cycle

(2020) Kate Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional geometry of protein interactomes

(2019) Noël Malod-Dognin et al.   BIOINFORMATICS

GOATOOLS: A Python library for Gene Ontology analyses

(2018) D. V. Klopfenstein et al.   Scientific Reports

Higher-order molecular organization as a source of biological function

(2018) Thomas Gaudelet et al.   BIOINFORMATICS

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference

(2018) Takeshi Obayashi et al.   NUCLEIC ACIDS RESEARCH

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Analysis of the relationship between coexpression domains and chromatin 3D organization

(2017) María E. Soler-Oliva et al.   PLoS Computational Biology

A global genetic interaction network maps a wiring diagram of cellular function

(2016) M. Costanzo et al.   SCIENCE

Graphlet-based Characterization of Directed Networks

(2016) Anida Sarajlić et al.   Scientific Reports

Topology-function conservation in protein–protein interaction networks

(2015) Darren Davis et al.   BIOINFORMATICS

L-GRAAL: Lagrangian graphlet-based network aligner

(2015) Noël Malod-Dognin et al.   BIOINFORMATICS

Gene regulation by antisense transcription

(2013) Vicent Pelechano et al.   NATURE REVIEWS GENETICS

Comparison of co-expression measures: mutual information, correlation, and model based indices

(2012) Lin Song et al.   BMC BIOINFORMATICS

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

Defining genetic interaction

(2008) R. Mani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA