Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition
Authors
Keywords
-
Journal
Nature Ecology & Evolution
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-10-20
DOI
10.1038/s41559-020-01299-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- One or two membranes? Diderm Firmicutes challenge the Gram‐positive/Gram‐negative divide
- (2020) Daniela Megrian et al. MOLECULAR MICROBIOLOGY
- Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)
- (2020) Thomas Cavalier-Smith et al. PROTOPLASMA
- Cryo-Electron Tomography Reveals the Complex Ultrastructural Organization of Multicellular Filamentous Chloroflexota (Chloroflexi) Bacteria
- (2020) Vasil A. Gaisin et al. Frontiers in Microbiology
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Evidence for phospholipid export from the bacterial inner membrane by the Mla ABC transport system
- (2019) Gareth W. Hughes et al. Nature Microbiology
- The Lpt ABC transporter for lipopolysaccharide export to the cell surface
- (2019) Paola Sperandeo et al. RESEARCH IN MICROBIOLOGY
- GeneSpy, a user-friendly and flexible genomic context visualizer
- (2018) Pierre Simon Garcia et al. BIOINFORMATICS
- The Mycobacterial Cell Envelope: A Relict From the Past or the Result of Recent Evolution?
- (2018) Antony T. Vincent et al. Frontiers in Microbiology
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
- (2017) Daniel I. Poppleton et al. Frontiers in Microbiology
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Complete genome sequence and cell structure of Limnochorda pilosa, a Gram-negative spore-former within the phylum Firmicutes
- (2016) Miho Watanabe et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Sporulation, bacterial cell envelopes and the origin of life
- (2016) Elitza I. Tocheva et al. NATURE REVIEWS MICROBIOLOGY
- Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes
- (2016) Luisa CS Antunes et al. eLife
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- Evolution of the Translocation and Assembly Module (TAM)
- (2015) Eva Heinz et al. Genome Biology and Evolution
- Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultatively anaerobic, pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes
- (2015) Miho Watanabe et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- The two-domain tree of life is linked to a new root for the Archaea
- (2015) Kasie Raymann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Structure and Regulation of Flagella inBacillus subtilis
- (2014) Sampriti Mukherjee et al. Annual Review of Genetics
- Comparative proteome analysis of Acidaminococcus intestini supports a relationship between outer membrane biogenesis in Negativicutes and Proteobacteria
- (2014) Chantal Campbell et al. ARCHIVES OF MICROBIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
- (2014) Sophie S. Abby et al. PLoS One
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- L-form bacteria, cell walls and the origins of life
- (2013) J. Errington Open Biology
- High-quality sequence clustering guided by network topology and multiple alignment likelihood
- (2012) Vincent Miele et al. BIOINFORMATICS
- Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes
- (2011) Radhey S. Gupta ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Ultra-fast sequence clustering from similarity networks with SiLiX
- (2011) Vincent Miele et al. BMC BIOINFORMATICS
- Peptidoglycan Remodeling and Conversion of an Inner Membrane into an Outer Membrane during Sporulation
- (2011) Elitza I. Tocheva et al. CELL
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Bacterial outer membrane evolution via sporulation?
- (2011) Waldemar Vollmer Nature Chemical Biology
- TonB-Dependent Transporters: Regulation, Structure, and Function
- (2010) Nicholas Noinaj et al. Annual Review of Microbiology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Hidden Markov model speed heuristic and iterative HMM search procedure
- (2010) L Steven Johnson et al. BMC BIOINFORMATICS
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- Cell envelope architecture in the Chloroflexi: a shifting frontline in a phylogenetic turf war
- (2010) Iain C. Sutcliffe ENVIRONMENTAL MICROBIOLOGY
- Cadaverine Covalently Linked to Peptidoglycan Is Required for Interaction between the Peptidoglycan and the Periplasm-Exposed S-Layer-Homologous Domain of Major Outer Membrane Protein Mep45 in Selenomonas ruminantium
- (2010) S. Kojima et al. JOURNAL OF BACTERIOLOGY
- A phylum level perspective on bacterial cell envelope architecture
- (2010) Iain C. Sutcliffe TRENDS IN MICROBIOLOGY
- The Bacterial Cell Envelope
- (2010) T. J. Silhavy et al. Cold Spring Harbor Perspectives in Biology
- Evidence for an early prokaryotic endosymbiosis
- (2009) James A. Lake NATURE
- Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
- (2009) Konstantinos Mavromatis et al. PLoS One
- An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane
- (2009) J. C. Malinverni et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Major Clade of Prokaryotes with Ancient Adaptations to Life on Land
- (2008) F. U. Battistuzzi et al. MOLECULAR BIOLOGY AND EVOLUTION
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started