In and Outs of Chuviridae Endogenous Viral Elements: Origin of a Potentially New Retrovirus and Signature of Ancient and Ongoing Arms Race in Mosquito Genomes

Insights Into an Unexplored Component of the Mosquito Repeatome: Distribution and Variability of Viral Sequences Integrated Into the Genome of the Arboviral Vector Aedes albopictus

(2019) Elisa Pischedda et al.   Frontiers in Genetics

Origins and evolutionary consequences of ancient endogenous retroviruses

(2019) Welkin E. Johnson   NATURE REVIEWS MICROBIOLOGY

Control of RNA viruses in mosquito cells through the acquisition of vDNA and endogenous viral elements

(2019) Michel Tassetto et al.   eLife

Insect-specific viruses: from discovery to potential translational applications

(2018) Shahideh Nouri et al.   Current Opinion in Virology

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish

(2017) Yusuke Inoue et al.   Nature Communications

Co-option of endogenous viral sequences for host cell function

(2017) John A .Frank et al.   Current Opinion in Virology

Retroviruses of the RDR superinfection interference group: ancient origins and broad host distribution of a promiscuous Env gene

(2017) Anindita Sinha et al.   Current Opinion in Virology

Origin of the retroviruses: when, where, and how?

(2017) Alexander Hayward   Current Opinion in Virology

Endogenous viruses of parasitic wasps: variations on a common theme

(2017) Jean-Michel Drezen et al.   Current Opinion in Virology

Viruses as vectors of horizontal transfer of genetic material in eukaryotes

(2017) Clément Gilbert et al.   Current Opinion in Virology

Novel viruses in salivary glands of mosquitoes from sylvatic Cerrado, Midwestern Brazil

(2017) Andressa Zelenski de Lara Pinto et al.   PLoS One

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

(2015) Clément Goubert et al.   Genome Biology and Evolution

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

“Ménage à Trois”: The Evolutionary Interplay between JSRV, enJSRVs and Domestic Sheep

(2014) Alessia Armezzani et al.   Viruses-Basel

Distinct features of the piRNA pathway in somatic and germ cells: from piRNA cluster transcription to piRNA processing and amplification

(2014) Emmanuelle Théron et al.   Mobile DNA

Refrex-1, a Soluble Restriction Factor against Feline Endogenous and Exogenous Retroviruses

(2013) J. Ito et al.   JOURNAL OF VIROLOGY

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Endogenous Viral Elements in Animal Genomes

(2010) Aris Katzourakis et al.   PLoS Genetics

The Great Billion-year War between Ribosome- and Capsid-encoding Organisms (Cells and Viruses) as the Major Source of Evolutionary Novelties

(2009) Patrick Forterre et al.   Annals of the New York Academy of Sciences

IDT SciTools: a suite for analysis and design of nucleic acid oligomers

(2008) R. Owczarzy et al.   NUCLEIC ACIDS RESEARCH