Understanding the Impact of Cultivar, Seed Origin, and Substrate on Bacterial Diversity of the Sugar Beet Rhizosphere and Suppression of Soil-Borne Pathogens

Earthworms and vermicompost: an eco-friendly approach for repaying nature’s debt

(2020) Archana Singh et al.   ENVIRONMENTAL GEOCHEMISTRY AND HEALTH

Biological Suppression of Populations of Heterodera schachtii Adapted to Different Host Genotypes of Sugar Beet

(2020) Caroline Eberlein et al.   Frontiers in Plant Science

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets

(2019) Peter Kusstatscher et al.   Microbiome

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

Effects of Continuous Sugar Beet Cropping on Rhizospheric Microbial Communities

(2019) Weijuan Huang et al.   Genes

Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean

(2018) Lucas William Mendes et al.   ISME Journal

Saving seed microbiomes

(2018) Gabriele Berg et al.   ISME Journal

Plant growth-promoting bacteria Kosakonia radicincitans mediate anti-herbivore defense in Arabidopsis thaliana

(2018) Anita K. Brock et al.   PLANTA

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

(2017) Lucas William Mendes et al.   ISME Journal

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

The seed microbiome: Origins, interactions, and impacts

(2017) Eric B. Nelson   PLANT AND SOIL

The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens

(2017) Daria Rybakova et al.   Microbiome

Exploring potential bacterial and fungal biocontrol agents transmitted from seeds to sprouts of wheat

(2016) Yali Huang et al.   BIOLOGICAL CONTROL

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Cucurbita pepo seed microbiome: genotype-specific composition and implications for breeding

(2016) Eveline Adam et al.   PLANT AND SOIL

Bacterial populations in juvenile maize rhizospheres originate from both seed and soil

(2016) David Johnston-Monje et al.   PLANT AND SOIL

Soil immune responses

(2016) J. M. Raaijmakers et al.   SCIENCE

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Vermicompost suppresses Rhizoctonia solani Kühn in cucumber seedlings

(2016) Y. Simsek Ersahin et al.   Journal of Plant Diseases and Protection

Terroir is a key driver of seed-associated microbial assemblages

(2015) Stephanie Klaedtke et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal invasion of the rhizosphere microbiome

(2015) Emilie Chapelle et al.   ISME Journal

Endophytes-assisted biocontrol: novel insights in ecology and the mode of action of Paenibacillus

(2015) Daria Rybakova et al.   PLANT AND SOIL

Emergence Shapes the Structure of the Seed Microbiota

(2014) Matthieu Barret et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial networks and co-occurrence relationships in the lettuce root microbiota

(2014) Massimiliano Cardinale et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic selection in sugar beet breeding populations

(2013) Tobias Würschum et al.   BMC GENETICS

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

(2013) Juliane C. Dohm et al.   NATURE

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

The rhizosphere revisited: root microbiomics

(2013) Peter A. H. M. Bakker et al.   Frontiers in Plant Science

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Plant protection and growth stimulation by microorganisms: biotechnological applications of Bacilli in agriculture

(2011) Alejandro Pérez-García et al.   CURRENT OPINION IN BIOTECHNOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Strain-specific colonization pattern of Rhizoctonia antagonists in the root system of sugar beet

(2010) Christin Zachow et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY